“Out of the Can”: A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus
出版年份 2018 全文链接
标题
“Out of the Can”: A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus
作者
关键词
-
出版物
Genes
Volume 9, Issue 10, Pages 485
出版商
MDPI AG
发表日期
2018-10-09
DOI
10.3390/genes9100485
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Essential fatty acid metabolism and requirements of the cleaner fish, ballan wrasse Labrus bergylta : Defining pathways of long-chain polyunsaturated fatty acid biosynthesis
- (2018) Naoki Kabeya et al. AQUACULTURE
- Sardine ( Sardina pilchardus ) lipid composition: Does it change after one year in captivity?
- (2018) Narcisa Maria Bandarra et al. FOOD CHEMISTRY
- First draft genome of an iconic clownfish species (Amphiprion frenatus )
- (2018) Anna Marcionetti et al. Molecular Ecology Resources
- The genome of the marine medaka Oryzias melastigma
- (2018) Hui-Su Kim et al. Molecular Ecology Resources
- Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
- (2018) Lily C. Hughes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-genome assembly of the coral reef Pearlscale Pygmy Angelfish (Centropyge vrolikii)
- (2018) Iria Fernandez-Silva et al. Scientific Reports
- The Divergent Genomes of Teleosts
- (2018) Vydianathan Ravi et al. Annual Review of Animal Biosciences
- Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly
- (2018) Mun Hua Tan et al. GigaScience
- Leveraging multiple transcriptome assembly methods for improved gene structure annotation
- (2018) Luca Venturini et al. GigaScience
- Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
- (2017) Paul Julian Kersey et al. NUCLEIC ACIDS RESEARCH
- Draft genome of the Antarctic dragonfish, Parachaenichthys charcoti
- (2017) Do-Hwan Ahn et al. GigaScience
- De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read
- (2017) Christopher M. Austin et al. GigaScience
- Whole genome sequencing data and de novo draft assemblies for 66 teleost species
- (2017) Martin Malmstrøm et al. Scientific Data
- Biosynthesis of long-chain polyunsaturated fatty acids in the African catfish Clarias gariepinus: Molecular cloning and functional characterisation of fatty acyl desaturase (fads2) and elongase (elovl2) cDNAs7
- (2016) Angela Oboh et al. AQUACULTURE
- A new method for decontamination of de novo transcriptomes using a hierarchical clustering algorithm
- (2016) Joël Lafond-Lapalme et al. BIOINFORMATICS
- KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
- (2016) Daniel Mapleson et al. BIOINFORMATICS
- Evolution of the immune system influences speciation rates in teleost fishes
- (2016) Martin Malmstrøm et al. NATURE GENETICS
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
- (2016) Mihaela Pertea et al. Nature Protocols
- NOVOPlasty:de novoassembly of organelle genomes from whole genome data
- (2016) Nicolas Dierckxsens et al. NUCLEIC ACIDS RESEARCH
- Long-chain polyunsaturated fatty acid biosynthesis in chordates: Insights into the evolution of Fads and Elovl gene repertoire
- (2016) L. Filipe C. Castro et al. PROGRESS IN LIPID RESEARCH
- Evolutionary functional elaboration of the Elovl2/5 gene family in chordates
- (2016) Óscar Monroig et al. Scientific Reports
- The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
- (2016) Alvaro Martinez Barrio et al. eLife
- ExaML version 3: a tool for phylogenomic analyses on supercomputers
- (2015) Alexey M. Kozlov et al. BIOINFORMATICS
- BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.
- (2015) Katharina J. Hoff et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
- (2015) Yi Wang et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Omega-3 long chain fatty acid “bioavailability”: A review of evidence and methodological considerations
- (2014) Samaneh Ghasemifard et al. PROGRESS IN LIPID RESEARCH
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Informed and automated k-mer size selection for genome assembly
- (2013) R. Chikhi et al. BIOINFORMATICS
- GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
- (2013) Gordon Gremme et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna
- (2013) Y. Nakamura et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MITOS: Improved de novo metazoan mitochondrial genome annotation
- (2012) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Functional Desaturase Fads1 (Δ5) and Fads2 (Δ6) Orthologues Evolved before the Origin of Jawed Vertebrates
- (2012) Luís Filipe Costa Castro et al. PLoS One
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Highly Unsaturated Fatty Acid Synthesis in Atlantic Salmon: Characterization of ELOVL5- and ELOVL2-like Elongases
- (2009) Sofia Morais et al. MARINE BIOTECHNOLOGY
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started