A Systems Analysis With “Simplified Source-Sink Model” Reveals Metabolic Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development in Tomato by LED Light Treatments

Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs

(2018) Kazuyoshi Kitazaki et al.   Scientific Reports

Integrated metabolomics for abiotic stress responses in plants

(2015) Ryo Nakabayashi et al.   CURRENT OPINION IN PLANT BIOLOGY

The metabolomics of oxidative stress

(2015) Graham Noctor et al.   PHYTOCHEMISTRY

Sucrose Metabolism: Gateway to Diverse Carbon Use and Sugar Signaling

(2014) Yong-Ling Ruan   Annual Review of Plant Biology

Photosynthesis under artificial light: the shift in primary and secondary metabolism

(2014) E. Darko et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcriptional Regulation of Fruit Ripening by Tomato FRUITFULL Homologs and Associated MADS Box Proteins

(2014) M. Fujisawa et al.   PLANT CELL

Tomato GOLDEN2-LIKE Transcription Factors Reveal Molecular Gradients That Function during Fruit Development and Ripening

(2014) C. V. Nguyen et al.   PLANT CELL

An update on source-to-sink carbon partitioning in tomato

(2014) Sonia Osorio et al.   Frontiers in Plant Science

Genetic regulation and structural changes during tomato fruit development and ripening

(2014) Paolo Pesaresi et al.   Frontiers in Plant Science

Field-omics—understanding large-scale molecular data from field crops

(2014) Erik Alexandersson et al.   Frontiers in Plant Science

2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis

(2014) Wagner L. Araújo et al.   Frontiers in Plant Science

Source-to-sink transport of sugar and regulation by environmental factors

(2013) Remi Lemoine et al.   Frontiers in Plant Science

Effects of light intensity and amount of supplemental LED lighting on photosynthesis and fruit growth of tomato plants under artificial conditions

(2013) Shoko HIKOSAKA et al.   JOURNAL OF AGRICULTURAL METEOROLOGY

Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components

(2012) Yogesh Mishra et al.   BMC PLANT BIOLOGY

The use of metabolomics to dissect plant responses to abiotic stresses

(2012) Toshihiro Obata et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Antisense Inhibition of the 2-Oxoglutarate Dehydrogenase Complex in Tomato Demonstrates Its Importance for Plant Respiration and during Leaf Senescence and Fruit Maturation

(2012) Wagner L. Araújo et al.   PLANT CELL

Exploring Tomato Gene Functions Based on Coexpression Modules Using Graph Clustering and Differential Coexpression Approaches

(2012) A. Fukushima et al.   PLANT PHYSIOLOGY

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Respiration and nitrogen assimilation: targeting mitochondria-associated metabolism as a means to enhance nitrogen use efficiency

(2011) C. H. Foyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recommendations for Reporting Metabolite Data

(2011) A. R. Fernie et al.   PLANT CELL

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development

(2011) Johannes Rohrmann et al.   PLANT JOURNAL

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

(2011) Miyako Kusano et al.   PLANT JOURNAL

Tomato Fruit Photosynthesis Is Seemingly Unimportant in Primary Metabolism and Ripening But Plays a Considerable Role in Seed Development

(2011) A. Lytovchenko et al.   PLANT PHYSIOLOGY

MACROCALYX and JOINTLESS Interact in the Transcriptional Regulation of Tomato Fruit Abscission Zone Development

(2011) T. Nakano et al.   PLANT PHYSIOLOGY

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

(2011) Sonia Osorio et al.   PLANT PHYSIOLOGY

Covering Chemical Diversity of Genetically-Modified Tomatoes Using Metabolomics for Objective Substantial Equivalence Assessment

(2011) Miyako Kusano et al.   PLoS One

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion

(2010) CRISTIÁN WULFF-ZOTTELE et al.   PLANT CELL AND ENVIRONMENT

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population

(2010) P. T. Do et al.   PLANT PHYSIOLOGY

Enzyme Activity Profiles during Fruit Development in Tomato Cultivars and Solanum pennellii

(2010) M. C. Steinhauser et al.   PLANT PHYSIOLOGY

Effects of intracanopy lighting on photosynthetic characteristics in cucumber

(2010) Rolf I. Pettersen et al.   SCIENTIA HORTICULTURAE

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Compensation for Systematic Cross-Contribution Improves Normalization of Mass Spectrometry Based Metabolomics Data

(2009) Henning Redestig et al.   ANALYTICAL CHEMISTRY

Stereological estimation of cell wall density of DR12 tomato mutant using three-dimensional confocal imaging

(2009) D. Legland et al.   ANNALS OF BOTANY

The responses of light interception, photosynthesis and fruit yield of cucumber to LED-lighting within the canopy

(2009) Govert Trouwborst et al.   PHYSIOLOGIA PLANTARUM

Gene and Metabolite Regulatory Network Analysis of Early Developing Fruit Tissues Highlights New Candidate Genes for the Control of Tomato Fruit Composition and Development

(2009) F. Mounet et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Plastid Transcriptomics and Translatomics of Tomato Fruit Development and Chloroplast-to-Chromoplast Differentiation: Chromoplast Gene Expression Largely Serves the Production of a Single Protein

(2008) S. Kahlau et al.   PLANT CELL

A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening

(2008) Zhefeng Lin et al.   PLANT JOURNAL

Inhibition of 2-Oxoglutarate Dehydrogenase in Potato Tuber Suggests the Enzyme Is Limiting for Respiration and Confirms Its Importance in Nitrogen Assimilation

(2008) W. L. Araujo et al.   PLANT PHYSIOLOGY

Effects of interlighting on yield and external fruit quality in year-round cultivated cucumber

(2008) Tiina Hovi-Pekkanen et al.   SCIENTIA HORTICULTURAE