The use of metabolomics to dissect plant responses to abiotic stresses

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

Additional role of O-acetylserine as a sulfur status-independent regulator during plant growth

(2012) Hans-Michael Hubberten et al.   PLANT JOURNAL

Cell type-specific transcriptional profiling: implications for metabolite profiling

(2012) Eric D. Rogers et al.   PLANT JOURNAL

On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions Scientific Correspondence

(2012) A. R. Fernie et al.   PLANT PHYSIOLOGY

ApplyingIn-SilicoRetention Index and Mass Spectra Matching for Identification of Unknown Metabolites in Accurate Mass GC-TOF Mass Spectrometry

(2011) Sangeeta Kumari et al.   ANALYTICAL CHEMISTRY

Drought, metabolites, and Arabidopsis natural variation: a promising combination for understanding adaptation to water-limited environments

(2011) Paul E Verslues et al.   CURRENT OPINION IN PLANT BIOLOGY

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolic recovery of Arabidopsis thaliana roots following cessation of oxidative stress

(2011) Martin Lehmann et al.   Metabolomics

Drought Responses of Leaf Tissues from Wheat Cultivars of Differing Drought Tolerance at the Metabolite Level

(2011) Jairus B. Bowne et al.   Molecular Plant

Metabolic and Phenotypic Responses of Greenhouse-Grown Maize Hybrids to Experimentally Controlled Drought Stress

(2011) Sandra Witt et al.   Molecular Plant

Survival and growth of Arabidopsis plants given limited water are not equal

(2011) Aleksandra Skirycz et al.   NATURE BIOTECHNOLOGY

KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research

(2011) Farit Mochamad Afendi et al.   PLANT AND CELL PHYSIOLOGY

Recommendations for Reporting Metabolite Data

(2011) A. R. Fernie et al.   PLANT CELL

Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis

(2011) DIEGO H. SANCHEZ et al.   PLANT CELL AND ENVIRONMENT

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells

(2011) Maik Böhmer et al.   PLANT JOURNAL

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

(2011) Miyako Kusano et al.   PLANT JOURNAL

Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein:Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Senescence

(2011) Wagner L. Araújo et al.   PLANT PHYSIOLOGY

Comparative Functional Genomics of Salt Stress in Related Model and Cultivated Plants Identifies and Overcomes Limitations to Translational Genomics

(2011) Diego H. Sanchez et al.   PLoS One

Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress

(2010) Vijay Joshi et al.   AMINO ACIDS

Tools for high-spatial and temporal-resolution analysis of environmental responses in plants

(2010) Choon W. Wee et al.   BIOTECHNOLOGY LETTERS

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

(2010) Sonali Dubey et al.   BMC GENOMICS

More from less: plant growth under limited water

(2010) Aleksandra Skirycz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Proteomics approaches to understand protein phosphorylation in pathway modulation

(2010) Waltraud X Schulze   CURRENT OPINION IN PLANT BIOLOGY

Sugar signals and molecular networks controlling plant growth

(2010) Sjef Smeekens et al.   CURRENT OPINION IN PLANT BIOLOGY

Prediction of metabolite identity from accurate mass, migration time prediction and isotopic pattern information in CE-TOFMS data

(2010) Masahiro Sugimoto et al.   ELECTROPHORESIS

CE-MS for metabolomics: Developments and applications in the period 2008-2010

(2010) Rawi Ramautar et al.   ELECTROPHORESIS

Metabolic profiling of Arabidopsis thaliana epidermal cells

(2010) Berit Ebert et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolomic and transcriptomic stress response of Escherichia coli

(2010) Szymon Jozefczuk et al.   Molecular Systems Biology

ASD: a comprehensive database of allosteric proteins and modulators

(2010) Z. Huang et al.   NUCLEIC ACIDS RESEARCH

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings

(2010) Toshihiro Obata et al.   PHYTOCHEMISTRY

Comprehensive Hormone Profiling in Developing Arabidopsis Seeds: Examination of the Site of ABA Biosynthesis, ABA Transport and Hormone Interactions

(2010) Yuri Kanno et al.   PLANT AND CELL PHYSIOLOGY

Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria

(2010) W. L. Araujo et al.   PLANT CELL

Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion

(2010) CRISTIÁN WULFF-ZOTTELE et al.   PLANT CELL AND ENVIRONMENT

Glycinebetaine protects plants against abiotic stress: mechanisms and biotechnological applications

(2010) TONY H. H. CHEN et al.   PLANT CELL AND ENVIRONMENT

Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte

(2010) Raphaël Lugan et al.   PLANT JOURNAL

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus

(2010) M. Rocha et al.   PLANT PHYSIOLOGY

The CBFs: Three arabidopsis transcription factors to cold acclimate

(2010) Joaquín Medina et al.   PLANT SCIENCE

Interaction with Diurnal and Circadian Regulation Results in Dynamic Metabolic and Transcriptional Changes during Cold Acclimation in Arabidopsis

(2010) Carmen Espinoza et al.   PLoS One

Metabolome variability in crop plant species – When, where, how much and so what?

(2010) Howard V. Davies et al.   REGULATORY TOXICOLOGY AND PHARMACOLOGY

Trehalose and plant stress responses: friend or foe?

(2010) Olivier Fernandez et al.   TRENDS IN PLANT SCIENCE

13C Isotope-Labeled Metabolomes Allowing for Improved Compound Annotation and Relative Quantification in Liquid Chromatography-Mass Spectrometry-based Metabolomic Research

(2009) Patrick Giavalisco et al.   ANALYTICAL CHEMISTRY

Dual Labeling of Metabolites for Metabolome Analysis (DLEMMA): A New Approach for the Identification and Relative Quantification of Metabolites by Means of Dual Isotope Labeling and Liquid Chromatography−Mass Spectrometry

(2009) Liron Feldberg et al.   ANALYTICAL CHEMISTRY

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

The responses of Arabidopsis thaliana to cadmium exposure explored via metabolite profiling

(2009) Xiumei Sun et al.   CHEMOSPHERE

Water: the invisible problem. Access to fresh water is considered to be a universal and free human right, but dwindling resources and a burgeoning population are increasing its economic value

(2009) Eleonora Cominelli et al.   EMBO REPORTS

S-Nitrosylation in plants: Pattern and function

(2009) Christian Lindermayr et al.   Journal of Proteomics

Application of NMR in plant metabolomics: techniques, problems and prospects

(2009) Jan Schripsema   PHYTOCHEMICAL ANALYSIS

An introduction to liquid chromatography–mass spectrometry instrumentation applied in plant metabolomic analyses

(2009) J. William Allwood et al.   PHYTOCHEMICAL ANALYSIS

Web-based resources for mass-spectrometry-based metabolomics: A user’s guide

(2009) Takayuki Tohge et al.   PHYTOCHEMISTRY

Metabolome Analysis of Response to Oxidative Stress in Rice Suspension Cells Overexpressing Cell Death Suppressor Bax Inhibitor-1

(2009) Toshiki Ishikawa et al.   PLANT AND CELL PHYSIOLOGY

Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis

(2009) K. Brautigam et al.   PLANT CELL

Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations

(2009) Stéphanie Arrivault et al.   PLANT JOURNAL

Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress

(2009) A. Skirycz et al.   PLANT PHYSIOLOGY

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A

(2009) K. Maruyama et al.   PLANT PHYSIOLOGY

Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants

(2009) G. Hernandez et al.   PLANT PHYSIOLOGY

Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots

(2009) P. Armengaud et al.   PLANT PHYSIOLOGY

Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions

(2009) Jérôme Grimplet et al.   PROTEOMICS

Proline accumulation in plants: a review

(2008) Nathalie Verbruggen et al.   AMINO ACIDS

Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants

(2008) Joost T. van Dongen et al.   ANNALS OF BOTANY

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles

(2008) Pawel Durek et al.   BMC Systems Biology

CE-MS in metabolomics

(2008) Rawi Ramautar et al.   ELECTROPHORESIS

Photosynthetic acclimation: State transitions and adjustment of photosystem stoichiometry - functional relationships between short-term and long-term light quality acclimation in plants

(2008) Lars Dietzel et al.   FEBS Journal

Ascorbate Peroxidase 1 Plays a Key Role in the Response ofArabidopsis thalianato Stress Combination

(2008) Shai Koussevitzky et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metal ion-inducing metabolite accumulation in Brassica rapa

(2008) Muhammad Jahangir et al.   JOURNAL OF PLANT PHYSIOLOGY

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux

(2008) Martin Lehmann et al.   Molecular Plant

Allosteric regulation and catalysis emerge via a common route

(2008) Nina M Goodey et al.   Nature Chemical Biology

Metabolite Profiling Reveals Distinct Changes in Carbon and Nitrogen Metabolism in Phosphate-Deficient Barley Plants (Hordeum vulgare L.)

(2008) Chun Y. Huang et al.   PLANT AND CELL PHYSIOLOGY

Metabolome and water status phenotyping ofArabidopsisunder abiotic stress cues reveals new insight intoESK1function

(2008) RAPHAEL LUGAN et al.   PLANT CELL AND ENVIRONMENT

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation inArabidopsis

(2008) HENDRIK TSCHOEP et al.   PLANT CELL AND ENVIRONMENT

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics

(2008) Kaoru Urano et al.   PLANT JOURNAL

Global Transcript Levels Respond to Small Changes of the Carbon Status during Progressive Exhaustion of Carbohydrates in Arabidopsis Rosettes

(2008) B. Usadel et al.   PLANT PHYSIOLOGY

Decrease in Manganese Superoxide Dismutase Leads to Reduced Root Growth and Affects Tricarboxylic Acid Cycle Flux and Mitochondrial Redox Homeostasis

(2008) M. J. Morgan et al.   PLANT PHYSIOLOGY

Galactinol and Raffinose Constitute a Novel Function to Protect Plants from Oxidative Damage

(2008) A. Nishizawa et al.   PLANT PHYSIOLOGY

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE

The relationship between metal toxicity and cellular redox imbalance

(2008) Shanti S. Sharma et al.   TRENDS IN PLANT SCIENCE