Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding

Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories

(2018) Mari Suontama et al.   HEREDITY

Multienvironment genomic variance decomposition analysis of open-pollinated Interior spruce (Picea glauca x engelmannii)

(2018) Omnia Gamal El-Dien et al.   MOLECULAR BREEDING

Genomic-based multiple-trait evaluation in Eucalyptus grandis using dominant DArT markers

(2018) Eduardo P. Cappa et al.   PLANT SCIENCE

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus

(2018) Biyue Tan et al.   PLANT SCIENCE

Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea

(2018) David Kainer et al.   G3-Genes Genomes Genetics

Genomic selection prediction models comparing sequence capture and SNP array genotyping methods

(2018) Bráulio Fabiano Xavier de Moraes et al.   MOLECULAR BREEDING

Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations

(2018) Bárbara S. F. Müller et al.   NEW PHYTOLOGIST

Phenotyping Whole Forests Will Help to Track Genetic Performance

(2018) Heidi S. Dungey et al.   TRENDS IN PLANT SCIENCE

GIS-based approach applied to optimizing recommendations of Eucalyptus genotypes

(2017) Gustavo E. Marcatti et al.   FOREST ECOLOGY AND MANAGEMENT

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model

(2017) R T Resende et al.   HEREDITY

Improving accuracy of breeding values by incorporating genomic information in spatial-competition mixed models

(2017) Eduardo P. Cappa et al.   MOLECULAR BREEDING

Identifying gene coexpression networks underlying the dynamic regulation of wood-forming tissues in Populus under diverse environmental conditions

(2017) Matthew Zinkgraf et al.   NEW PHYTOLOGIST

Genomic predictions of breeding values in a cloned Eucalyptus globulus population in Chile

(2017) Ricardo Durán et al.   Tree Genetics & Genomes

Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated Picea glauca

(2017) Blaise Ratcliffe et al.   G3-Genes Genomes Genetics

Exploration of genetic architecture through sib-ship reconstruction in advanced breeding population of Eucalyptus nitens

(2017) Jaroslav Klápště et al.   PLoS One

Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem

(2017) Steven G. Hussey et al.   Scientific Reports

Performance of genomic prediction within and across generations in maritime pine

(2016) Jérôme Bartholomé et al.   BMC GENOMICS

The contribution of dominance to phenotype prediction in a pine breeding and simulated population

(2016) J E de Almeida Filho et al.   HEREDITY

Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides

(2016) Annette M. Fahrenkrog et al.   NEW PHYTOLOGIST

Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus

(2016) Rafael Tassinari Resende et al.   NEW PHYTOLOGIST

Genomic selection in maritime pine

(2016) Fikret Isik et al.   PLANT SCIENCE

Open chromatin reveals the functional maize genome

(2016) Eli Rodgers-Melnick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lessons from Domestication: Targeting Cis -Regulatory Elements for Crop Improvement

(2016) Gwen Swinnen et al.   TRENDS IN PLANT SCIENCE

Locally Downscaled and Spatially Customizable Climate Data for Historical and Future Periods for North America

(2016) Tongli Wang et al.   PLoS One

Genomic prediction models for grain yield of spring bread wheat in diverse agro-ecological zones

(2016) C. Saint Pierre et al.   Scientific Reports

Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing

(2015) Omnia Gamal El-Dien et al.   BMC GENOMICS

Perspectives for Genomic Selection Applications and Research in Plants

(2015) Nicolas Heslot et al.   CROP SCIENCE

Modeling additive and non-additive effects in a hybrid population using genome-wide genotyping: prediction accuracy implications

(2015) J-M Bouvet et al.   HEREDITY

A comparison of genomic selection models across time in interior spruce (Picea engelmannii × glauca) using unordered SNP imputation methods

(2015) B Ratcliffe et al.   HEREDITY

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240Eucalyptustree genomes across 12 species

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

Parentage Reconstruction in Eucalyptus nitens Using SNPs and Microsatellite Markers: A Comparative Analysis of Marker Data Power and Robustness

(2015) Emily J. Telfer et al.   PLoS One

Genomic selection accuracies within and between environments and small breeding groups in white spruce

(2014) Jean Beaulieu et al.   BMC GENOMICS

The Effects of Demography and Long-Term Selection on the Accuracy of Genomic Prediction with Sequence Data

(2014) Iona M. MacLeod et al.   GENETICS

Unraveling Additive from Nonadditive Effects Using Genomic Relationship Matrices

(2014) Patricio R. Muñoz et al.   GENETICS

Accuracy of genomic selection models in a large population of open-pollinated families in white spruce

(2014) J Beaulieu et al.   HEREDITY

Genomic selection in forest tree breeding: the concept and an outlook to the future

(2014) Fikret Isik   NEW FORESTS

Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations ofPopulus trichocarpa

(2014) Athena D. McKown et al.   NEW PHYTOLOGIST

Genomic selection in crops, trees and forages: a review

(2014) Z. Lin et al.   Crop & Pasture Science

Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana

(2014) Alessandra M. Sullivan et al.   Cell Reports

Genome-wide association mapping for wood characteristics inPopulusidentifies an array of candidate single nucleotide polymorphisms

(2013) Ilga Porth et al.   NEW PHYTOLOGIST

Impacts of Population Structure and Analytical Models in Genome-Wide Association Studies of Complex Traits in Forest Trees: A Case Study in Eucalyptus globulus

(2013) Eduardo P. Cappa et al.   PLoS One

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

(2013) Diego Jarquín et al.   THEORETICAL AND APPLIED GENETICS

Genomic Estimated Breeding Values Using Genomic Relationship Matrices in a Cloned Population of Loblolly Pine

(2013) Jaime Zapata-Valenzuela et al.   G3-Genes Genomes Genetics

Applied Animal Genomics: Results from the Field

(2013) Alison L. Van Eenennaam et al.   Annual Review of Animal Biosciences

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

(2012) Marcos D. V. Resende et al.   NEW PHYTOLOGIST

SNP markers trace familial linkages in a cloned population of Pinus taeda—prospects for genomic selection

(2012) Jaime Zapata-Valenzuela et al.   Tree Genetics & Genomes

Efficiency of genomic selection with models including dominance effect in the context of Eucalyptus breeding

(2012) Marie Denis et al.   Tree Genetics & Genomes

Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus

(2011) Jean-Marc Gion et al.   BMC GENOMICS

Association Genetics of Wood Physical Traits in the Conifer White Spruce and Relationships With Gene Expression

(2011) Jean Beaulieu et al.   GENETICS

Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L

(2011) W P Cumbie et al.   HEREDITY

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica

(2011) Hiroyoshi Iwata et al.   Tree Genetics & Genomes

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus

(2010) Carolina P Sansaloni et al.   Plant Methods

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Genomics of growth traits in forest trees

(2009) Dario Grattapaglia et al.   CURRENT OPINION IN PLANT BIOLOGY

Increased accuracy of artificial selection by using the realized relationship matrix

(2009) B. J. HAYES et al.   Genetics Research

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Quantitative genetic analysis of biomass and wood chemistry ofPopulusunder different nitrogen levels

(2009) Evandro Novaes et al.   NEW PHYTOLOGIST

Quantitative trait locus (QTL) analysis of wood quality traits in Eucalyptus nitens

(2009) Bala R. Thumma et al.   Tree Genetics & Genomes

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE