A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240Eucalyptustree genomes across 12 species
出版年份 2015 全文链接
标题
A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240Eucalyptustree genomes across 12 species
作者
关键词
-
出版物
NEW PHYTOLOGIST
Volume 206, Issue 4, Pages 1527-1540
出版商
Wiley
发表日期
2015-02-13
DOI
10.1111/nph.13322
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- (2014) Sandra Unterseer et al. BMC GENOMICS
- Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
- (2014) Christian Schlötterer et al. NATURE REVIEWS GENETICS
- Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
- (2014) Shichen Wang et al. PLANT BIOTECHNOLOGY JOURNAL
- Design and Characterization of a 52K SNP Chip for Goats
- (2014) Gwenola Tosser-Klopp et al. PLoS One
- TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
- (2014) Jeffrey C. Glaubitz et al. PLoS One
- Genotyping-by-Sequencing for Populus Population Genomics: An Assessment of Genome Sampling Patterns and Filtering Approaches
- (2014) Martin P. Schilling et al. PLoS One
- High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination
- (2013) Emilie Chancerel et al. BMC BIOLOGY
- Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing
- (2013) T. M. Beissinger et al. GENETICS
- Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping
- (2013) Mathieu Gautier et al. MOLECULAR ECOLOGY
- Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners
- (2013) Nathalie Pavy et al. Molecular Ecology Resources
- A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies
- (2013) A. Geraldes et al. Molecular Ecology Resources
- Stability of quantitative trait loci for growth and wood properties across multiple pedigrees and environments inEucalyptus globulus
- (2013) Jules S. Freeman et al. NEW PHYTOLOGIST
- On the importance of balancing selection in plants
- (2013) Lynda F. Delph et al. NEW PHYTOLOGIST
- High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array
- (2013) Wubishet A. Bekele et al. PLANT BIOTECHNOLOGY JOURNAL
- Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean
- (2013) Qijian Song et al. PLoS One
- Cross-Amplification and Validation of SNPs Conserved over 44 Million Years between Seals and Dogs
- (2013) Joseph I. Hoffman et al. PLoS One
- Impacts of Population Structure and Analytical Models in Genome-Wide Association Studies of Complex Traits in Forest Trees: A Case Study in Eucalyptus globulus
- (2013) Eduardo P. Cappa et al. PLoS One
- SNP calling by sequencing pooled samples
- (2012) Emanuele Raineri et al. BMC BIOINFORMATICS
- A reference linkage map for Eucalyptus
- (2012) Corey J Hudson et al. BMC GENOMICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Consistent divergence times and allele sharing measured from cross-species application of SNP chips developed for three domestic species
- (2012) J. M. Miller et al. Molecular Ecology Resources
- Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees
- (2012) Marcos D. V. Resende et al. NEW PHYTOLOGIST
- Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple
- (2012) David Chagné et al. PLoS One
- Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
- (2012) Ignazio Verde et al. PLoS One
- Identification of Novel Single Nucleotide Polymorphisms (SNPs) in Deer (Odocoileus spp.) Using the BovineSNP50 BeadChip
- (2012) Gwilym D. Haynes et al. PLoS One
- Integration of Two Diploid Potato Linkage Maps with the Potato Genome Sequence
- (2012) Kimberly J. Felcher et al. PLoS One
- Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome
- (2012) César D. Petroli et al. PLoS One
- Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato
- (2012) Sung-Chur Sim et al. PLoS One
- Progress in Myrtaceae genetics and genomics: Eucalyptus as the pivotal genus
- (2012) Dario Grattapaglia et al. Tree Genetics & Genomes
- Genotyping-by-Sequencing for Plant Breeding and Genetics
- (2012) Jesse A. Poland et al. Plant Genome
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- The development and characterization of a 60K SNP chip for chicken
- (2011) Martien AM Groenen et al. BMC GENOMICS
- High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species
- (2011) Dario Grattapaglia et al. BMC PLANT BIOLOGY
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling
- (2011) Fabio Marroni et al. PLANT JOURNAL
- A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome
- (2011) Martin W. Ganal et al. PLoS One
- STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
- (2011) Dent A. Earl et al. Conservation Genetics Resources
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Ascertainment Biases in SNP Chips Affect Measures of Population Divergence
- (2010) A. Albrechtsen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Application of single nucleotide polymorphisms to non-model species: a technical review
- (2010) M. R. GARVIN et al. Molecular Ecology Resources
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus
- (2010) Carolina P Sansaloni et al. Plant Methods
- Genotyping systems for Eucalyptus based on tetra-, penta-, and hexanucleotide repeat EST microsatellites and their use for individual fingerprinting and assignment tests
- (2010) Danielle Assis Faria et al. Tree Genetics & Genomes
- Quantification of rare allelic variants from pooled genomic DNA
- (2009) Todd E Druley et al. NATURE METHODS
- Development and Characterization of a High Density SNP Genotyping Assay for Cattle
- (2009) Lakshmi K. Matukumalli et al. PLoS One
- Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology
- (2009) Antonio M. Ramos et al. PLoS One
- High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
- (2008) Evandro Novaes et al. BMC GENOMICS
- A SNP transferability survey within the genus Vitis
- (2008) Silvia Vezzulli et al. BMC PLANT BIOLOGY
- Eucalyptusapplied genomics: from gene sequences to breeding tools
- (2008) Dario Grattapaglia et al. NEW PHYTOLOGIST
- Congruence between environmental parameters, morphology and genetic structure in Australia’s most widely distributed eucalypt, Eucalyptus camaldulensis
- (2008) P. A. Butcher et al. Tree Genetics & Genomes
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