Nuclear-cytoplasmic compartmentalization of the herpes simplex virus 1 infected cell transcriptome is co-ordinated by the viral endoribonuclease vhs and cofactors to facilitate the translation of late proteins

Herpes Simplex Virus 1 Tegument Protein VP22 Abrogates cGAS/STING-Mediated Antiviral Innate Immunity

(2018) Jian Huang et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus 1 UL41 Protein Suppresses the IRE1/XBP1 Signal Pathway of the Unfolded Protein Response via Its RNase Activity

(2016) Pengchao Zhang et al.   JOURNAL OF VIROLOGY

Cellular responses to HSV-1 infection are linked to specific types of alterations in the host transcriptome

(2016) Benxia Hu et al.   Scientific Reports

Viral Nucleases Induce an mRNA Degradation-Transcription Feedback Loop in Mammalian Cells

(2015) Emma Abernathy et al.   Cell Host & Microbe

The Overlooked Fact: Fundamental Need for Spike-In Control for Virtually All Genome-Wide Analyses

(2015) Kaifu Chen et al.   MOLECULAR AND CELLULAR BIOLOGY

Herpes simplex virus 1 UL41 protein abrogates the antiviral activity of hZAP by degrading its mRNA

(2015) Chenhe Su et al.   Virology Journal

Widespread disruption of host transcription termination in HSV-1 infection

(2015) Andrzej J. Rutkowski et al.   Nature Communications

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Herpes Simplex Virus 1 Counteracts Viperin via Its Virion Host Shutoff Protein UL41

(2014) G. Shen et al.   JOURNAL OF VIROLOGY

RNA-seq Analysis of Host and Viral Gene Expression Highlights Interaction between Varicella Zoster Virus and Keratinocyte Differentiation

(2014) Meleri Jones et al.   PLoS Pathogens

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Mode of Virus Rescue Determines the Acquisition of VHS Mutations in VP22-Negative Herpes Simplex Virus 1

(2013) K. Ebert et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus 1 Counteracts Tetherin Restriction via Its Virion Host Shutoff Activity

(2013) H. L. Zenner et al.   JOURNAL OF VIROLOGY

Interplay between viruses and host mRNA degradation

(2012) Krishna Narayanan et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Deletion of the Herpes Simplex Virus 1 UL49 Gene Results in mRNA and Protein Translation Defects That Are Complemented by Secondary Mutations in UL41

(2012) E. F. Mbong et al.   JOURNAL OF VIROLOGY

A Network of Protein Interactions around the Herpes Simplex Virus Tegument Protein VP22

(2012) K. Maringer et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus 1 VP22 Regulates Translocation of Multiple Viral and Cellular Proteins and Promotes Neurovirulence

(2012) M. Tanaka et al.   JOURNAL OF VIROLOGY

A Common Strategy for Host RNA Degradation by Divergent Viruses

(2012) M. M. Gaglia et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

The Herpes Simplex Virus 1 vhs Protein Enhances Translation of Viral True Late mRNAs and Virus Production in a Cell Type-Dependent Manner

(2011) B. Dauber et al.   JOURNAL OF VIROLOGY

Role of Herpes Simplex Virus ICP27 in the Degradation of mRNA by Virion Host Shutoff RNase

(2010) B. Taddeo et al.   JOURNAL OF VIROLOGY

The Virion Host Shutoff Endonuclease (UL41) of Herpes Simplex Virus Interacts with the Cellular Cap-Binding Complex eIF4F

(2010) H. G. Page et al.   JOURNAL OF VIROLOGY

Poly(A)-Binding Protein 1 Partially Relocalizes to the Nucleus during Herpes Simplex Virus Type 1 Infection in an ICP27-Independent Manner and Does Not Inhibit Virus Replication

(2010) C. Salaun et al.   JOURNAL OF VIROLOGY

Nuclear Import of Cytoplasmic Poly(A) Binding Protein Restricts Gene Expression via Hyperadenylation and Nuclear Retention of mRNA

(2010) G. R. Kumar et al.   MOLECULAR AND CELLULAR BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Virion Incorporation of the Herpes Simplex Virus Type 1 Tegument Protein VP22 Occurs via Glycoprotein E-Specific Recruitment to the Late Secretory Pathway

(2009) J. Stylianou et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus Proteins ICP27 and UL47 Associate with Polyadenylate-Binding Protein and Control Its Subcellular Distribution

(2009) E. Dobrikova et al.   JOURNAL OF VIROLOGY

Aberrant Herpesvirus-Induced Polyadenylation Correlates With Cellular Messenger RNA Destruction

(2009) Yeon J. Lee et al.   PLOS BIOLOGY

Activation of Host Translational Control Pathways by a Viral Developmental Switch

(2009) Carolina Arias et al.   PLoS Pathogens

VP22 of Herpes Simplex Virus 1 Promotes Protein Synthesis at Late Times in Infection and Accumulation of a Subset of Viral mRNAs at Early Times in Infection

(2008) C. Duffy et al.   JOURNAL OF VIROLOGY

Small Interfering RNAs That Deplete the Cellular Translation Factor eIF4H Impede mRNA Degradation by the Virion Host Shutoff Protein of Herpes Simplex Virus

(2008) N. Sarma et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus ICP27 Increases Translation of a Subset of Viral Late mRNAs

(2008) E. C. Fontaine-Rodriguez et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus Virion Host Shutoff Attenuates Establishment of the Antiviral State

(2008) T. J. Pasieka et al.   JOURNAL OF VIROLOGY