Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer

Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis

(2018) Tirupathi Malavath et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Structure of an Ancient Respiratory System

(2018) Hongjun Yu et al.   CELL

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

(2018) Lukas Zimmermann et al.   JOURNAL OF MOLECULAR BIOLOGY

Long-range proton-coupled electron transfer in biological energy conversion: towards mechanistic understanding of respiratory complex I

(2018) Ville R. I. Kaila   Journal of the Royal Society Interface

Cryo-EM structures of complex I from mouse heart mitochondria in two biochemically defined states

(2018) Ahmed-Noor A. Agip et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Cryo-EM structures of complex I from mouse heart mitochondria in two biochemically defined states

(2018) Ahmed-Noor A. Agip et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Real-space refinement in PHENIX for cryo-EM and crystallography

(2018) Pavel V. Afonine et al.   Acta Crystallographica Section D-Structural Biology

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Redox changes of ferredoxin, P700, and plastocyanin measured simultaneously in intact leaves

(2017) Ulrich Schreiber   PHOTOSYNTHESIS RESEARCH

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

Reduction of the off-pathway iron-sulphur cluster N1a of Escherichia coli respiratory complex I restrains NAD+ dissociation

(2017) Emmanuel Gnandt et al.   Scientific Reports

NDH-1 and NDH-2 Plastoquinone Reductases in Oxygenic Photosynthesis

(2016) Gilles Peltier et al.   Annual Review of Plant Biology

Energy conversion, redox catalysis and generation of reactive oxygen species by respiratory complex I

(2016) Judy Hirst et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Structure and function of mitochondrial complex I

(2016) Christophe Wirth et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

Atomic structure of the entire mammalian mitochondrial complex I

(2016) Karol Fiedorczuk et al.   NATURE

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin

(2015) Risa Mutoh et al.   BIOCHEMISTRY

Electron-transfer kinetics in cyanobacterial cells: Methyl viologen is a poor inhibitor of linear electron flow

(2015) Pierre Sétif   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy

(2015) Benjamin A Barad et al.   NATURE METHODS

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

A giant molecular proton pump: structure and mechanism of respiratory complex I

(2015) Leonid A. Sazanov   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The NdhV subunit is required to stabilize the chloroplast NADH dehydrogenase-like complex in Arabidopsis

(2015) Xiangyuan Fan et al.   PLANT JOURNAL

Mechanistic insight from the crystal structure of mitochondrial complex I

(2015) V. Zickermann et al.   SCIENCE

Kinetic Studies of a Ferredoxin-Dependent Cyanobacterial Nitrate Reductase

(2014) Anurag P. Srivastava et al.   BIOCHEMISTRY

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy

(2014) Woonghee Lee et al.   BIOINFORMATICS

The mechanism of coupling between electron transfer and proton translocation in respiratory complex I

(2014) Leonid A. Sazanov   JOURNAL OF BIOENERGETICS AND BIOMEMBRANES

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

The 5 kDa Protein NdhP Is Essential for Stable NDH-1L Assembly in Thermosynechococcus elongatus

(2014) Hannes Wulfhorst et al.   PLoS One

Semiquinone and Cluster N6 Signals in His-tagged Proton-translocating NADH:Ubiquinone Oxidoreductase (Complex I) fromEscherichia coli

(2013) Madhavan Narayanan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

In PlantaMutagenesis of Src Homology 3 Domain-like Fold of NdhS, a Ferredoxin-binding Subunit of the Chloroplast NADH Dehydrogenase-like Complex inArabidopsis

(2013) Hiroshi Yamamoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Crystal structure of the entire respiratory complex I

(2013) Rozbeh Baradaran et al.   NATURE

Low-resolution refinement tools inREFMAC5

(2012) Robert A. Nicholls et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

(2012) Naohiro Kobayashi et al.   JOURNAL OF BIOMOLECULAR NMR

Mössbauer Spectroscopy on Respiratory Complex I: The Iron–Sulfur Cluster Ensemble in the NADH-Reduced Enzyme Is Partially Oxidized

(2011) Hannah R. Bridges et al.   BIOCHEMISTRY

NdhP and NdhQ: Two Novel Small Subunits of the Cyanobacterial NDH-1 Complex

(2011) Marc M. Nowaczyk et al.   BIOCHEMISTRY

Identification of Novel Ssl0352 Protein (NdhS), Essential for Efficient Operation of Cyclic Electron Transport around Photosystem I, in NADPH:plastoquinone Oxidoreductase (NDH-1) Complexes ofSynechocystissp. PCC 6803

(2011) Natalia Battchikova et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An Src Homology 3 Domain-Like Fold Protein Forms a Ferredoxin Binding Site for the Chloroplast NADH Dehydrogenase-Like Complex inArabidopsis

(2011) Hiroshi Yamamoto et al.   PLANT CELL

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Cyanobacterial NDH-1 complexes: Novel insights and remaining puzzles

(2010) Natalia Battchikova et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Direct assignment of EPR spectra to structurally defined iron-sulfur clusters in complex I by double electron-electron resonance

(2010) M. M. Roessler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

New Insights into the Catalytic Cycle of Plant Nitrite Reductase. Electron Transfer Kinetics and Charge Storage†

(2009) Pierre Sétif et al.   BIOCHEMISTRY

Reduction of the Iron−Sulfur Clusters in Mitochondrial NADH:Ubiquinone Oxidoreductase (Complex I) by EuII-DTPA, a Very Low Potential Reductant†

(2008) Torsten Reda et al.   BIOCHEMISTRY

Electrostatic Interactions Between FeS Clusters in NADH:Ubiquinone Oxidoreductase (Complex I) from Escherichia coli†

(2008) Liliya Euro et al.   BIOCHEMISTRY

Were there any “misassignments” among iron–sulfur clusters N4, N5 and N6b in NADH-quinone oxidoreductase (complex I)?

(2008) Tomoko Ohnishi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Protein structure databases with new web services for structural biology and biomedical research

(2008) D. M. Standley et al.   BRIEFINGS IN BIOINFORMATICS

Iron-Sulfur Cluster N5 Is Coordinated by an HXXXCXXCXXXXXC Motif in the NuoG Subunit ofEscherichia coliNADH:Quinone Oxidoreductase (Complex I)

(2008) Eiko Nakamaru-Ogiso et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Chloroplast NAD(P)H Dehydrogenase Complex Interacts with Photosystem I inArabidopsis

(2008) Lianwei Peng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY