Comprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS)
出版年份 2019 全文链接
标题
Comprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS)
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
出版商
Springer Nature
发表日期
2019-01-03
DOI
10.1038/s41587-018-0001-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Pervasive Protein Thermal Stability Variation during the Cell Cycle
- (2018) Isabelle Becher et al. CELL
- Capturing the interactome of newly transcribed RNA
- (2018) Xichen Bao et al. NATURE METHODS
- UniProt: the universal protein knowledgebase
- (2018) The UniProt Consortium NUCLEIC ACIDS RESEARCH
- Transcriptome-wide discovery of coding and noncoding RNA-binding proteins
- (2018) Rongbing Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GAPDH as a model non-canonical AU-rich RNA binding protein
- (2018) Elsa D. Garcin SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Trans -acting translational regulatory RNA binding proteins
- (2018) Robert F. Harvey et al. Wiley Interdisciplinary Reviews-RNA
- SecA mediates cotranslational targeting and translocation of an inner membrane protein
- (2017) Shuai Wang et al. JOURNAL OF CELL BIOLOGY
- Expanding Proteome Coverage with CHarge Ordered Parallel Ion aNalysis (CHOPIN) Combined with Broad Specificity Proteolysis
- (2017) Simon Davis et al. JOURNAL OF PROTEOME RESEARCH
- Assembly and activation of the Escherichia coli divisome
- (2017) Shishen Du et al. MOLECULAR MICROBIOLOGY
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY
- (2017) Simon D Harding et al. NUCLEIC ACIDS RESEARCH
- A subcellular map of the human proteome
- (2017) Peter J. Thul et al. SCIENCE
- Comprehensive Identification of RNA-Binding Domains in Human Cells
- (2016) Alfredo Castello et al. MOLECULAR CELL
- Local regulation of gene expression by lncRNA promoters, transcription and splicing
- (2016) Jesse M. Engreitz et al. NATURE
- Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
- (2016) Eric L Van Nostrand et al. NATURE METHODS
- In vivosingle-RNA tracking shows that most tRNA diffuses freely in live bacteria
- (2016) Anne Plochowietz et al. NUCLEIC ACIDS RESEARCH
- Grad-seq guides the discovery of ProQ as a major small RNA-binding protein
- (2016) Alexandre Smirnov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila
- (2016) Vasiliy O. Sysoev et al. Nature Communications
- The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease
- (2016) Yalin Liao et al. Cell Reports
- Spatial organization shapes the turnover of a bacterial transcriptome
- (2016) Jeffrey R Moffitt et al. eLife
- Dynamic tubulation of mitochondria drives mitochondrial network formation
- (2015) Chong Wang et al. CELL RESEARCH
- Structure and Assembly Pathway of the Ribosome Quality Control Complex
- (2015) Sichen Shao et al. MOLECULAR CELL
- The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3
- (2015) Colleen A. McHugh et al. NATURE
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines
- (2015) Mingcong Wang et al. PROTEOMICS
- Metabolic Enzymes Enjoying New Partnerships as RNA-Binding Proteins
- (2015) Alfredo Castello et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
- (2015) Benedikt M. Beckmann et al. Nature Communications
- The sweet side of RNA regulation: glyceraldehyde-3-phosphate dehydrogenase as a noncanonical RNA-binding protein
- (2015) Michael R. White et al. Wiley Interdisciplinary Reviews-RNA
- MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes
- (2014) Graeme C. McAlister et al. ANALYTICAL CHEMISTRY
- CGAT: computational genomics analysis toolkit
- (2014) D. Sims et al. BIOINFORMATICS
- A Dimer Interface Mutation in Glyceraldehyde-3-Phosphate Dehydrogenase Regulates Its Binding to AU-rich RNA
- (2014) Michael R. White et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Cocrystal Structures of Glycyl-tRNA Synthetase in Complex with tRNA Suggest Multiple Conformational States in Glycylation
- (2014) Xiangjing Qin et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Crystal Structure of Human Myosin 1c—The Motor in GLUT4 Exocytosis: Implications for Ca2+ Regulation and 14-3-3 Binding
- (2014) Stefan Münnich et al. JOURNAL OF MOLECULAR BIOLOGY
- MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra
- (2014) Viktoria Dorfer et al. JOURNAL OF PROTEOME RESEARCH
- Targeted sequencing for gene discovery and quantification using RNA CaptureSeq
- (2014) Tim R Mercer et al. Nature Protocols
- Genomic analysis of RNA localization
- (2014) J Matthew Taliaferro et al. RNA Biology
- RNA localization in bacteria
- (2014) Avi-ad Avraam Buskila et al. RNA Biology
- The function of spliceosome components in open mitosis
- (2014) Jennifer C. Hofmann et al. Nucleus
- Exosomes secreted by human cells transport largely mRNA fragments that are enriched in the 3′-untranslated regions
- (2013) Arsen O Batagov et al. Biology Direct
- Posttranscriptional Control of T Cell Effector Function by Aerobic Glycolysis
- (2013) Chih-Hao Chang et al. CELL
- The bacterial Min system
- (2013) Veronica Wells Rowlett et al. CURRENT BIOLOGY
- iCLIP: Protein–RNA interactions at nucleotide resolution
- (2013) Ina Huppertz et al. METHODS
- DNMT1-interacting RNAs block gene-specific DNA methylation
- (2013) Annalisa Di Ruscio et al. NATURE
- The Nucleic Acid Database: new features and capabilities
- (2013) Buvaneswari Coimbatore Narayanan et al. NUCLEIC ACIDS RESEARCH
- Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
- (2012) Alfredo Castello et al. CELL
- Identification and characterization of a novel myosin Ic isoform that localizes to the nucleus
- (2012) Ivanna Ihnatovych et al. Cytoskeleton
- The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
- (2012) Alexander G. Baltz et al. MOLECULAR CELL
- Subcellular localization of RNA and proteins in prokaryotes
- (2012) Keren Nevo-Dinur et al. TRENDS IN GENETICS
- Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds
- (2012) Wipapat Kladwang et al. Scientific Reports
- MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation
- (2011) Laurent Gatto et al. BIOINFORMATICS
- Raftlin Is Involved in the Nucleocapture Complex to Induce Poly(I:C)-mediated TLR3 Activation
- (2011) Ayako Watanabe et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- SecA Interacts with Ribosomes in Order to Facilitate Posttranslational Translocation in Bacteria
- (2011) Damon Huber et al. MOLECULAR CELL
- A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
- (2011) Kevin C. Wang et al. NATURE
- Gene silencing by microRNAs: contributions of translational repression and mRNA decay
- (2011) Eric Huntzinger et al. NATURE REVIEWS GENETICS
- The bacterial actin MreB rotates, and rotation depends on cell-wall assembly
- (2011) S. van Teeffelen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Features of Double-stranded RNA-binding Domains of RNA Helicase A Are Necessary for Selective Recognition and Translation of Complex mRNAs
- (2010) Arnaz Ranji et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins
- (2010) Markus Hafner et al. Jove-Journal of Visualized Experiments
- Eukaryotic Stress Granules: The Ins and Outs of Translation
- (2009) J. Ross Buchan et al. MOLECULAR CELL
- Diverse molecular functions of Hu proteins
- (2008) M. N. Hinman et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- The role of microtubule movement in bidirectional organelle transport
- (2008) I. M. Kulic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring RNA transcription and turnover in vivo by using click chemistry
- (2008) C. Y. Jao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started