ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
出版年份 2018 全文链接
标题
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
作者
关键词
-
出版物
BMC BIOINFORMATICS
Volume 19, Issue 1, Pages -
出版商
Springer Nature America, Inc
发表日期
2018-11-20
DOI
10.1186/s12859-018-2436-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Annotation-free quantification of RNA splicing using LeafCutter
- (2017) Yang I. Li et al. NATURE GENETICS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
- (2016) André Kahles et al. BIOINFORMATICS
- A new view of transcriptome complexity and regulation through the lens of local splicing variations
- (2016) Jorge Vaquero-Garcia et al. eLife
- A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs
- (2015) Gustavo Sacomoto et al. Algorithms for Molecular Biology
- rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
- (2014) Shihao Shen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons
- (2014) Andrew Best et al. Nature Communications
- Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs
- (2013) Stefano Beretta et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Modelling and simulating generic RNA-Seq experiments with the flux simulator
- (2012) Thasso Griebel et al. NUCLEIC ACIDS RESEARCH
- SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
- (2012) Mark F Rogers et al. GENOME BIOLOGY
- Identification of novel transcripts in annotated genomes using RNA-Seq
- (2011) A. Roberts et al. BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- A General Definition and Nomenclature for Alternative Splicing Events
- (2008) Michael Sammeth et al. PLoS Computational Biology
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now