Comprehensive Analysis of Transcriptome Variation Uncovers Known and Novel Driver Events in T-Cell Acute Lymphoblastic Leukemia
出版年份 2013 全文链接
标题
Comprehensive Analysis of Transcriptome Variation Uncovers Known and Novel Driver Events in T-Cell Acute Lymphoblastic Leukemia
作者
关键词
-
出版物
PLoS Genetics
Volume 9, Issue 12, Pages e1003997
出版商
Public Library of Science (PLoS)
发表日期
2013-12-20
DOI
10.1371/journal.pgen.1003997
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Assessing identity, redundancy and confounds in Gene Ontology annotations over time
- (2013) Jesse Gillis et al. BIOINFORMATICS
- New MLLT10 gene recombinations in pediatric T-acute lymphoblastic leukemia
- (2013) L. Brandimarte et al. BLOOD
- Discovery of somatic STAT5b mutations in large granular lymphocytic leukemia
- (2013) H. L. M. Rajala et al. BLOOD
- Bivalent promoter marks and a latent enhancer may prime the leukaemia oncogene LMO1 for ectopic expression in T-cell leukaemia
- (2013) S H Oram et al. LEUKEMIA
- Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data
- (2013) Emma M. Quinn et al. PLoS One
- Cancer Genome Landscapes
- (2013) B. Vogelstein et al. SCIENCE
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Extensive molecular mapping of TCR / - and TCR -involved chromosomal translocations reveals distinct mechanisms of oncogene activation in T-ALL
- (2012) S. Le Noir et al. BLOOD
- Mutation of the receptor tyrosine phosphatase PTPRC (CD45) in T-cell acute lymphoblastic leukemia
- (2012) M. Porcu et al. BLOOD
- Chimeric RNAs as potential biomarkers for tumor diagnosis
- (2012) Jianhua Zhou et al. BMB Reports
- Hotspot Mutations in H3F3A and IDH1 Define Distinct Epigenetic and Biological Subgroups of Glioblastoma
- (2012) Dominik Sturm et al. CANCER CELL
- From oncogene to tumor suppressor
- (2012) Iris Uribesalgo et al. CELL CYCLE
- Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events
- (2012) J. Liu et al. GENOME RESEARCH
- The transcriptional landscape and mutational profile of lung adenocarcinoma
- (2012) J.-S. Seo et al. GENOME RESEARCH
- The molecular basis of T cell acute lymphoblastic leukemia
- (2012) Pieter Van Vlierberghe et al. JOURNAL OF CLINICAL INVESTIGATION
- Newly described activating JAK3 mutations in T-cell acute lymphoblastic leukemia
- (2012) T Bains et al. LEUKEMIA
- Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma
- (2012) Jeremy Schwartzentruber et al. NATURE
- The genetic basis of early T-cell precursor acute lymphoblastic leukaemia
- (2012) Jinghui Zhang et al. NATURE
- The difficult calls in RNA editing
- (2012) Brenda Bass et al. NATURE BIOTECHNOLOGY
- Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas
- (2012) Gang Wu et al. NATURE GENETICS
- Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia
- (2012) Kim De Keersmaecker et al. NATURE GENETICS
- Exome RNA sequencing reveals rare and novel alternative transcripts
- (2012) Jonatan Halvardson et al. NUCLEIC ACIDS RESEARCH
- ExPASy: SIB bioinformatics resource portal
- (2012) P. Artimo et al. NUCLEIC ACIDS RESEARCH
- JAK/STAT signaling in hematological malignancies
- (2012) W Vainchenker et al. ONCOGENE
- High Accuracy Mutation Detection in Leukemia on a Selected Panel of Cancer Genes
- (2012) Zeynep Kalender Atak et al. PLoS One
- SomaticSniper: identification of somatic point mutations in whole genome sequencing data
- (2011) David E. Larson et al. BIOINFORMATICS
- Identification of novel transcripts in annotated genomes using RNA-Seq
- (2011) A. Roberts et al. BIOINFORMATICS
- FERM domain mutations induce gain of function in JAK3 in adult T-cell leukemia/lymphoma
- (2011) N. E. Elliott et al. BLOOD
- GC-Content Normalization for RNA-Seq Data
- (2011) Davide Risso et al. BMC BIOINFORMATICS
- Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
- (2011) Serban Nacu et al. BMC Medical Genomics
- Gain-of-function mutations ininterleukin-7 receptor-α(IL7R) in childhood acute lymphoblastic leukemias
- (2011) Chen Shochat et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
- (2011) Ryan D. Morin et al. NATURE
- MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers
- (2011) Christian Steidl et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Oncogenic IL7R gain-of-function mutations in childhood T-cell acute lymphoblastic leukemia
- (2011) Priscila P Zenatti et al. NATURE GENETICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Computational methods for transcriptome annotation and quantification using RNA-seq
- (2011) Manuel Garber et al. NATURE METHODS
- SMART 7: recent updates to the protein domain annotation resource
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- Mutant p53 drives multinucleation and invasion through a process that is suppressed by ANKRD11
- (2011) J E Noll et al. ONCOGENE
- Proline-Rich Tyrosine Kinase 2 (Pyk2) Promotes Cell Motility of Hepatocellular Carcinoma through Induction of Epithelial to Mesenchymal Transition
- (2011) Chris K. Sun et al. PLoS One
- Mutations in CIC and FUBP1 Contribute to Human Oligodendroglioma
- (2011) C. Bettegowda et al. SCIENCE
- Regulatory gene network circuits underlying T cell development from multipotent progenitors
- (2011) Hao Yuan Kueh et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
- (2011) Andrew McPherson et al. PLoS Computational Biology
- Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
- (2010) William McLaren et al. BIOINFORMATICS
- SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
- (2010) Rodrigo Goya et al. BIOINFORMATICS
- Expression of tenascin-C and its isoforms in the breast
- (2010) David S. Guttery et al. CANCER AND METASTASIS REVIEWS
- Integrative analysis of the melanoma transcriptome
- (2010) M. F. Berger et al. GENOME RESEARCH
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- PHF6 mutations in T-cell acute lymphoblastic leukemia
- (2010) Pieter Van Vlierberghe et al. NATURE GENETICS
- Advances in understanding cancer genomes through second-generation sequencing
- (2010) Matthew Meyerson et al. NATURE REVIEWS GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Transcriptome sequencing to detect gene fusions in cancer
- (2009) Christopher A. Maher et al. NATURE
- The transcriptional network for mesenchymal transformation of brain tumours
- (2009) Maria Stella Carro et al. NATURE
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
- (2009) R. Drmanac et al. SCIENCE
- A comprehensive analysis of the CDKN2A gene in childhood acute lymphoblastic leukemia reveals genomic deletion, copy number neutral loss of heterozygosity, and association with specific cytogenetic subgroups
- (2008) S. Sulong et al. BLOOD
- Proline-rich tyrosine kinase 2 (Pyk2) promotes proliferation and invasiveness of hepatocellular carcinoma cells through c-Src/ERK activation
- (2008) C. K. Sun et al. CARCINOGENESIS
- Somatically acquiredJAK1mutations in adult acute lymphoblastic leukemia
- (2008) Elisabetta Flex et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Cooperative genetic defects in TLX3 rearranged pediatric T-ALL
- (2008) P Van Vlierberghe et al. LEUKEMIA
- Alternative Splicing in Colon, Bladder, and Prostate Cancer Identified by Exon Array Analysis
- (2008) Kasper Thorsen et al. MOLECULAR & CELLULAR PROTEOMICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- Biology and Treatment of Acute Lymphoblastic Leukemia
- (2008) Rob Pieters et al. PEDIATRIC CLINICS OF NORTH AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started