From Cellular Characteristics to Disease Diagnosis: Uncovering Phenotypes with Supercells

Automated image analysis of nuclear shape: What can we learn from a prematurely aged cell?

(2016) Meghan K. Driscoll et al.   Aging-US

Th22, but not Th17 Might be a Good Index to Predict the Tissue Involvement of Systemic Lupus Erythematosus

(2013) Xu-yan Yang et al.   JOURNAL OF CLINICAL IMMUNOLOGY

Critical assessment of automated flow cytometry data analysis techniques

(2013) Nima Aghaeepour et al.   NATURE METHODS

Circulating CD4+ CD25brightFOXP3+ regulatory T-cells are significantly reduced in bullous pemphigoid patients

(2012) P. Quaglino et al.   ARCHIVES OF DERMATOLOGICAL RESEARCH

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays*

(2012) Nima Aghaeepour et al.   BIOINFORMATICS

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

(2012) Y. Ge et al.   BIOINFORMATICS

RchyOptimyx: Cellular hierarchy optimization for flow cytometry

(2012) Nima Aghaeepour et al.   CYTOMETRY PART A

LTB4 Is a Signal-Relay Molecule during Neutrophil Chemotaxis

(2012) Philippe V. Afonso et al.   DEVELOPMENTAL CELL

Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

(2012) Ben D. MacArthur et al.   NATURE CELL BIOLOGY

Inferring Phenotypic Properties from Single-Cell Characteristics

(2012) Peng Qiu   PLoS One

Innate immune response to homologous rotavirus infection in the small intestinal villous epithelium at single-cell resolution

(2012) A. Sen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated Analysis of Multidimensional Flow Cytometry Data Improves Diagnostic Accuracy Between Mantle Cell Lymphoma and Small Lymphocytic Lymphoma

(2011) Habil Zare et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

Central nervous system recruitment of effector memory CD8+ T lymphocytes during neuroinflammation is dependent on  4 integrin

(2011) I. Ifergan et al.   BRAIN

MCAM-expressing CD4+ T cells in peripheral blood secrete IL-17A and are significantly elevated in inflammatory autoimmune diseases

(2011) Pradeep K. Dagur et al.   JOURNAL OF AUTOIMMUNITY

Label-Free Bond-Selective Imaging by Listening to Vibrationally Excited Molecules

(2011) Han-Wei Wang et al.   PHYSICAL REVIEW LETTERS

Flow Cytometry, Amped Up

(2011) C. Benoist et al.   SCIENCE

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Cellular Heterogeneity: Do Differences Make a Difference?

(2010) Steven J. Altschuler et al.   CELL

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

flowCore: a Bioconductor package for high throughput flow cytometry

(2009) Florian Hahne et al.   BMC BIOINFORMATICS

CD27 Expression on CD4+ T Cells Differentiates Effector from Regulatory T Cell Subsets in the Lung

(2009) D. G. Mack et al.   JOURNAL OF IMMUNOLOGY

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Cytoskeleton-based forecasting of stem cell lineage fates

(2009) M. D. Treiser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

(2008) Hannah H. Chang et al.   NATURE

Central and local limit theorems for RNA structures

(2007) Emma Y. Jin et al.   JOURNAL OF THEORETICAL BIOLOGY