RchyOptimyx: Cellular hierarchy optimization for flow cytometry

B Cells With High Side Scatter Parameter by Flow Cytometry Correlate With Inferior Survival in Diffuse Large B-Cell Lymphoma

(2012) Ali Bashashati et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays*

(2012) Nima Aghaeepour et al.   BIOINFORMATICS

OMIP-008: Measurement of Th1 and Th2 cytokine polyfunctionality of human T cells

(2012) Cindy L. Zuleger et al.   CYTOMETRY PART A

OMIP-010: A new 10-color monoclonal antibody panel for polychromatic immunophenotyping of small hematopoietic cell samples

(2012) Frank W. M. B. Preijers et al.   CYTOMETRY PART A

OMIP-006: Phenotypic subset analysis of human T regulatory cells via polychromatic flow cytometry

(2012) David M. Murdoch et al.   CYTOMETRY PART A

OMIP-009: Characterization of antigen-specific human T-cells

(2012) Laurie Lamoreaux et al.   CYTOMETRY PART A

OMIP-005: Quality and phenotype of antigen-responsive rhesus macaque T cells

(2012) Kathryn E. Foulds et al.   CYTOMETRY PART A

OMIP-007: Phenotypic analysis of human natural killer cells

(2012) Michael A. Eller et al.   CYTOMETRY PART A

Cytometry: Today’s technology and tomorrow’s horizons

(2012) Pratip K. Chattopadhyay et al.   METHODS

A deep profiler's guide to cytometry

(2012) Sean C. Bendall et al.   TRENDS IN IMMUNOLOGY

Automated Analysis of Multidimensional Flow Cytometry Data Improves Diagnostic Accuracy Between Mantle Cell Lymphoma and Small Lymphocytic Lymphoma

(2011) Habil Zare et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

OMIP-004: In-depth characterization of human T regulatory cells

(2011) Angélique Biancotto et al.   CYTOMETRY PART A

OMIP-003: Phenotypic analysis of human memory B cells

(2011) Chungwen Wei et al.   CYTOMETRY PART A

SPICE: Exploration and analysis of post-cytometric complex multivariate datasets

(2011) Mario Roederer et al.   CYTOMETRY PART A

Immune Activation in the Female Genital Tract During HIV Infection Predicts Mucosal CD4 Depletion and HIV Shedding

(2011) Heather B. Jaspan et al.   JOURNAL OF INFECTIOUS DISEASES

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

(2011) Peng Qiu et al.   NATURE BIOTECHNOLOGY

A human memory T cell subset with stem cell–like properties

(2011) Luca Gattinoni et al.   NATURE MEDICINE

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

The curvHDR method for gating flow cytometry samples

(2010) Ulrike Naumann et al.   BMC BIOINFORMATICS

Misty Mountain clustering: application to fast unsupervised flow cytometry gating

(2010) Istvan P Sugar et al.   BMC BIOINFORMATICS

Data reduction for spectral clustering to analyze high throughput flow cytometry data

(2010) Habil Zare et al.   BMC BIOINFORMATICS

OMIP-001: Quality and phenotype of Ag-responsive human T-cells

(2010) Yolanda D. Mahnke et al.   CYTOMETRY PART A

Optimization of a highly standardized carboxyfluorescein succinimidyl ester flow cytometry panel and gating strategy design using discriminative information measure evaluation

(2010) Cliburn Chan et al.   CYTOMETRY PART A

OMIP-002: Phenotypic analysis of specific human CD8+ T-cells using peptide-MHC class I multimers for any of four epitopes

(2010) Pratip K. Chattopadhyay et al.   CYTOMETRY PART A

OMIPs-Orchestrating multiplexity in polychromatic science

(2010) Mario Roederer et al.   CYTOMETRY PART A

Rapid cell population identification in flow cytometry data

(2010) Nima Aghaeepour et al.   CYTOMETRY PART A

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

Unraveling the functions of plasmacytoid dendritic cells during viral infections, autoimmunity, and tolerance

(2010) Melissa Swiecki et al.   IMMUNOLOGICAL REVIEWS

Highly multiparametric analysis by mass cytometry

(2010) Olga Ornatsky et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Disruption of Intestinal CD4+ T Cell Homeostasis Is a Key Marker of Systemic CD4+ T Cell Activation in HIV-Infected Individuals

(2010) S. N. Gordon et al.   JOURNAL OF IMMUNOLOGY

Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping

(2010) E S Costa et al.   LEUKEMIA

Co-ordinated regulation of plasmacytoid dendritic cell surface receptors upon stimulation with herpes simplex virus type 1

(2009) Philipp Schuster et al.   IMMUNOLOGY

Molecular Characterization of Human Plasmacytoid Dendritic Cells

(2009) Wei Cao   JOURNAL OF CLINICAL IMMUNOLOGY

Immunologic and Virologic Events in Early HIV Infection Predict Subsequent Rate of Progression

(2009) Anuradha Ganesan et al.   JOURNAL OF INFECTIOUS DISEASES

Automated high-dimensional flow cytometric data analysis

(2009) S. Pyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel markers of normal and neoplastic human plasmacytoid dendritic cells

(2008) T. Marafioti et al.   BLOOD

Automated gating of flow cytometry data via robust model-based clustering

(2008) Kenneth Lo et al.   CYTOMETRY PART A

Statistical mixture modeling for cell subtype identification in flow cytometry

(2008) Cliburn Chan et al.   CYTOMETRY PART A

Increasing Age at HIV Seroconversion From 18 to 40 Years Is Associated With Favorable Virologic and Immunologic Responses to HAART

(2008) Amy C Weintrob et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES