Critical assessment of automated flow cytometry data analysis techniques

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays*

(2012) Nima Aghaeepour et al.   BIOINFORMATICS

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

(2012) Y. Ge et al.   BIOINFORMATICS

RchyOptimyx: Cellular hierarchy optimization for flow cytometry

(2012) Nima Aghaeepour et al.   CYTOMETRY PART A

Cytometry by Time-of-Flight Shows Combinatorial Cytokine Expression and Virus-Specific Cell Niches within a Continuum of CD8+ T Cell Phenotypes

(2012) Evan W. Newell et al.   IMMUNITY

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue

(2012) Andrea Califano et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A deep profiler's guide to cytometry

(2012) Sean C. Bendall et al.   TRENDS IN IMMUNOLOGY

Automated Analysis of Multidimensional Flow Cytometry Data Improves Diagnostic Accuracy Between Mantle Cell Lymphoma and Small Lymphocytic Lymphoma

(2011) Habil Zare et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

SPICE: Exploration and analysis of post-cytometric complex multivariate datasets

(2011) Mario Roederer et al.   CYTOMETRY PART A

Verification of systems biology research in the age of collaborative competition

(2011) Pablo Meyer et al.   NATURE BIOTECHNOLOGY

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

(2011) Peng Qiu et al.   NATURE BIOTECHNOLOGY

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

The curvHDR method for gating flow cytometry samples

(2010) Ulrike Naumann et al.   BMC BIOINFORMATICS

Misty Mountain clustering: application to fast unsupervised flow cytometry gating

(2010) Istvan P Sugar et al.   BMC BIOINFORMATICS

Data reduction for spectral clustering to analyze high throughput flow cytometry data

(2010) Habil Zare et al.   BMC BIOINFORMATICS

A Review of Ensemble Methods in Bioinformatics

(2010) Pengyi Yang et al.   Current Bioinformatics

Data analysis in flow cytometry: The future just started

(2010) Enrico Lugli et al.   CYTOMETRY PART A

Rapid cell population identification in flow cytometry data

(2010) Nima Aghaeepour et al.   CYTOMETRY PART A

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures

(2010) Marc A. Suchard et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping

(2010) E S Costa et al.   LEUKEMIA

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

Lessons from the DREAM2 Challenges

(2009) Gustavo Stolovitzky et al.   Annals of the New York Academy of Sciences

flowCore: a Bioconductor package for high throughput flow cytometry

(2009) Florian Hahne et al.   BMC BIOINFORMATICS

Automated high-dimensional flow cytometric data analysis

(2009) S. Pyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated gating of flow cytometry data via robust model-based clustering

(2008) Kenneth Lo et al.   CYTOMETRY PART A

MIFlowCyt: The minimum information about a flow cytometry experiment

(2008) Jamie A. Lee et al.   CYTOMETRY PART A

Statistical mixture modeling for cell subtype identification in flow cytometry

(2008) Cliburn Chan et al.   CYTOMETRY PART A

Flow cytometer with mass spectrometer detection for massively multiplexed single-cell biomarker assay

(2008) Scott D. Tanner et al.   PURE AND APPLIED CHEMISTRY