Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples
出版年份 2017 全文链接
标题
Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples
作者
关键词
-
出版物
Scientific Reports
Volume 7, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-06-19
DOI
10.1038/s41598-017-02239-5
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- First next-generation sequencing full-genome characterization of a hepatitis C virus genotype 7 divergent subtype
- (2016) M. Salmona et al. CLINICAL MICROBIOLOGY AND INFECTION
- First genome characterization of a novel hepatitis C virus genotype 5 variant
- (2016) Cécile Henquell et al. INFECTION GENETICS AND EVOLUTION
- 1970s and ‘Patient 0’ HIV-1 genomes illuminate early HIV/AIDS history in North America
- (2016) Michael Worobey et al. NATURE
- Zika Virus in the Americas — Yet Another Arbovirus Threat
- (2016) Anthony S. Fauci et al. NEW ENGLAND JOURNAL OF MEDICINE
- Development of a candidate reference material for adventitious virus detection in vaccine and biologicals manufacturing by deep sequencing
- (2016) Edward T. Mee et al. VACCINE
- Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015: the Global Burden of Disease Study 2015
- (2016) Haidong Wang et al. Lancet HIV
- Library construction for next-generation sequencing: Overviews and challenges
- (2016) Steven R. Head et al. BIOTECHNIQUES
- First evidence of transmission of an HIV-1 M/O intergroup recombinant virus
- (2015) Paul Alain Ngoupo et al. AIDS
- Evaluation of Unbiased Next-Generation Sequencing of RNA (RNA-seq) as a Diagnostic Method in Influenza Virus-Positive Respiratory Samples
- (2015) Nicole Fischer et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Evaluation of convenient pretreatment protocols for RNA virus metagenomics in serum and tissue samples
- (2015) Toon Rosseel et al. JOURNAL OF VIROLOGICAL METHODS
- Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes
- (2015) Sarah Temmam et al. PLoS One
- Unknown
- (2015) TRANSFUSION
- Challenges of the Unknown: Clinical Application of Microbial Metagenomics
- (2015) Graham Rose et al. International Journal of Genomics
- Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity
- (2015) Ka-Cheung Luk et al. PLoS One
- Assessment of the Utility of Whole Genome Sequencing of Measles Virus in the Characterisation of Outbreaks
- (2015) Ana Raquel Penedos et al. PLoS One
- Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
- (2014) Kenneth G Frey et al. BMC GENOMICS
- Detecting the emergence of novel, zoonotic viruses pathogenic to humans
- (2014) Ronald Rosenberg CELLULAR AND MOLECULAR LIFE SCIENCES
- Comparison of Real-Time PCR and Antigen Assays for Detection of Hepatitis E Virus in Blood Donors
- (2014) T. Vollmer et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Epidemiology and impact of HIV coinfection with Hepatitis B and Hepatitis C viruses in Sub-Saharan Africa
- (2014) Philippa C. Matthews et al. JOURNAL OF CLINICAL VIROLOGY
- Global epidemiology and genotype distribution of the hepatitis C virus infection
- (2014) Erin Gower et al. JOURNAL OF HEPATOLOGY
- Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
- (2014) Michael C. Nelson et al. PLoS One
- An introduction to the analysis of shotgun metagenomic data
- (2014) Thomas J. Sharpton Frontiers in Plant Science
- nhmmer: DNA homology search with profile HMMs
- (2013) T. J. Wheeler et al. BIOINFORMATICS
- Fast, reliable and low cost user-developed protocol for detection, quantification and genotyping of hepatitis C virus
- (2013) Katarina Davalieva et al. JOURNAL OF VIROLOGICAL METHODS
- Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery
- (2013) Richard J. Hall et al. JOURNAL OF VIROLOGICAL METHODS
- Comparative analysis of RNA sequencing methods for degraded or low-input samples
- (2013) Xian Adiconis et al. NATURE METHODS
- The role of mutational robustness in RNA virus evolution
- (2013) Adam S. Lauring et al. NATURE REVIEWS MICROBIOLOGY
- A Modified RNA-Seq Approach for Whole Genome Sequencing of RNA Viruses from Faecal and Blood Samples
- (2013) Elizabeth M. Batty et al. PLoS One
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Minor groove binder modification of widely used TaqMan probe for hepatitis E virus reduces risk of false negative real-time PCR results
- (2012) Jeremy A. Garson et al. JOURNAL OF VIROLOGICAL METHODS
- Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces
- (2012) Z. Wu et al. JOURNAL OF VIROLOGY
- Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010
- (2012) Rafael Lozano et al. LANCET
- A New Phlebovirus Associated with Severe Febrile Illness in Missouri
- (2012) Laura K. McMullan et al. NEW ENGLAND JOURNAL OF MEDICINE
- Isolation of a Novel Coronavirus from a Man with Pneumonia in Saudi Arabia
- (2012) Ali M. Zaki et al. NEW ENGLAND JOURNAL OF MEDICINE
- Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
- (2012) Christine M. Malboeuf et al. NUCLEIC ACIDS RESEARCH
- Human viruses: discovery and emergence
- (2012) M. Woolhouse et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data
- (2012) Alexander R. Macalalad et al. PLoS Computational Biology
- Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
- (2011) Kyoung-Ho Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Sensitive Assay for Virus Discovery in Respiratory Clinical Samples
- (2011) Michel de Vries et al. PLoS One
- Two Novel Parvoviruses in Frugivorous New and Old World Bats
- (2011) Marta Canuti et al. PLoS One
- A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing
- (2011) Gordon M. Daly et al. PLoS One
- Using next generation sequencing to identify yellow fever virus in Uganda
- (2011) Laura K. McMullan et al. VIROLOGY
- Metagenomic Analysis of Fever, Thrombocytopenia and Leukopenia Syndrome (FTLS) in Henan Province, China: Discovery of a New Bunyavirus
- (2011) Bianli Xu et al. PLoS Pathogens
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- Genomic DNA amplification by the multiple displacement amplification (MDA) method: Figure 1
- (2009) Roger S. Lasken BIOCHEMICAL SOCIETY TRANSACTIONS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome
- (2008) Luciano de Souza Luna et al. Virology Journal
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More