Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes

(2016) Alan P. R. Lorenzetti et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat

(2015) Zhen-Yong Chen et al.   BMC GENOMICS

A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis

(2015) Jixian Zhai et al.   CELL

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

To Bloom or Not to Bloom: Role of MicroRNAs in Plant Flowering

(2015) Sachin Teotia et al.   Molecular Plant

Efficient and Inducible Use of Artificial MicroRNAs inMarchantia polymorpha

(2015) Eduardo Flores-Sandoval et al.   PLANT AND CELL PHYSIOLOGY

Wheat mitogen-activated protein kinase gene TaMPK4 improves plant tolerance to multiple stresses through modifying root growth, ROS metabolism, and nutrient acquisitions

(2015) Lin Hao et al.   PLANT CELL REPORTS

Stress responsive miRNAs and isomiRs in cereals

(2015) Hikmet Budak et al.   PLANT SCIENCE

MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors

(2015) Patricia Baldrich et al.   RNA Biology

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

(2015) Todd Blevins et al.   eLife

A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis

(2015) Wataru Matsunaga et al.   Frontiers in Plant Science

miRNA regulation of nutrient homeostasis in plants

(2015) Soumitra Paul et al.   Frontiers in Plant Science

ROS mediated MAPK signaling in abiotic and biotic stress- striking similarities and differences

(2015) Siddhi K. Jalmi et al.   Frontiers in Plant Science

Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)

(2014) Fenglong Sun et al.   BMC PLANT BIOLOGY

New wheat microRNA using whole-genome sequence

(2014) Kuaybe Yucebilgili Kurtoglu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.)

(2014) Ranjeet Ranjan Kumar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state

(2014) Pedro Crevillén et al.   NATURE

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

What Is Stress? Dose-Response Effects in Commonly Used in Vitro Stress Assays

(2014) H. Claeys et al.   PLANT PHYSIOLOGY

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

A single locus confers tolerance to continuous light and allows substantial yield increase in tomato

(2014) Aaron I. Velez-Ramirez et al.   Nature Communications

Rising temperatures reduce global wheat production

(2014) S. Asseng et al.   Nature Climate Change

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Identification of UV-B-induced microRNAs in wheat

(2013) B. Wang et al.   GENETICS AND MOLECULAR RESEARCH

ROS as key players in plant stress signalling

(2013) A. Baxter et al.   JOURNAL OF EXPERIMENTAL BOTANY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-based molecular markers: a novel PCR-based genotyping technique inBrassicaspecies

(2013) Donghui Fu et al.   PLANT BREEDING

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice

(2012) Blanca E Barrera-Figueroa et al.   BMC PLANT BIOLOGY

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

MicroRNA turnover: when, how, and why

(2012) Stefan Rüegger et al.   TRENDS IN BIOCHEMICAL SCIENCES

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Roles of Mutation and Selection in Speciation: From Hugo de Vries to the Modern Genomic Era

(2011) Masatoshi Nei et al.   Genome Biology and Evolution

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans

(2011) Eric L. Greer et al.   NATURE

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Conservation and divergence in plant microRNAs

(2011) Matthew W. Jones-Rhoades   PLANT MOLECULAR BIOLOGY

MicroRNAs and their diverse functions in plants

(2011) Guiling Sun   PLANT MOLECULAR BIOLOGY

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

(2011) Michael J Axtell et al.   GENOME BIOLOGY

miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis

(2010) Li Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

(2010) A. Molnar et al.   SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Differentially Expressed miRNAs Potentially Involved in the Regulation of Defense Mechanism to Drought Stress in Maize Seedlings

(2009) Liya Wei et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Structural insights into mechanisms of the small RNA methyltransferase HEN1

(2009) Ying Huang et al.   NATURE

Ectopic expression of miR396 suppressesGRFtarget gene expression and alters leaf growth inArabidopsis

(2009) Dongmei Liu et al.   PHYSIOLOGIA PLANTARUM

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

A miRacle in plant development: Role of microRNAs in cell differentiation and patterning

(2008) D GARCIA   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY