New wheat microRNA using whole-genome sequence

Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing

(2013) Kuaybe Yucebilgili Kurtoglu et al.   PLoS One

Subgenomic analysis of microRNAs in polyploid wheat

(2012) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Expression profile of miRNAs in Populus cathayana L. and Salix matsudana Koidz under salt stress

(2012) Jing Zhou et al.   MOLECULAR BIOLOGY REPORTS

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Role of recently evolved miRNA regulation of sunflowerHaWRKY6in response to temperature damage

(2012) Jorge I. Giacomelli et al.   NEW PHYTOLOGIST

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

Characterization of miRNAs in Response to Short-Term Waterlogging in Three Inbred Lines of Zea mays

(2012) Zhijie Liu et al.   PLoS One

Sorting the Wheat from the Chaff: Identifying miRNAs in Genomic Survey Sequences of Triticum aestivum Chromosome 1AL

(2012) Stuart J. Lucas et al.   PLoS One

Identification and Comparative Analysis of MicroRNAs Associated with Low-N Tolerance in Rice Genotypes

(2012) Lata Nischal et al.   PLoS One

microRNAs Associated with Drought Response in the Bioenergy Crop Sugarcane (Saccharum spp.)

(2012) Thaís Helena Ferreira et al.   PLoS One

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs

(2011) Ping Xuan et al.   BIOINFORMATICS

MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences

(2011) Yonggan Wu et al.   BMC BIOINFORMATICS

Discovery of barley miRNAs through deep sequencing of short reads

(2011) Andreas W Schreiber et al.   BMC GENOMICS

Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs

(2011) Michal Kenan-Eichler et al.   GENETICS

Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs

(2011) Vesselin Baev et al.   GENOMICS

Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa

(2011) Xiang Yu et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA regulated defense responses in Triticum aestivum L. during Puccinia graminis f.sp. tritici infection

(2011) Om Prakash Gupta et al.   MOLECULAR BIOLOGY REPORTS

Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression

(2011) Hikmet Budak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

(2011) Pilar Hernandez et al.   PLANT JOURNAL

Exploration of small non coding RNAs in wheat (Triticum aestivum L.)

(2011) Yingyin Yao et al.   PLANT MOLECULAR BIOLOGY

Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid

(2011) Feng-Ming An et al.   PLoS One

Domestication of Transposable Elements into MicroRNA Genes in Plants

(2011) Yang Li et al.   PLoS One

First Survey of the Wheat Chromosome 5A Composition through a Next Generation Sequencing Approach

(2011) Nicola Vitulo et al.   PLoS One

Genome-Wide Identification of MicroRNAs in Response to Low Nitrate Availability in Maize Leaves and Roots

(2011) Zhenhua Xu et al.   PLoS One

Small RNAs, DNA methylation and transposable elements in wheat

(2010) Dario Cantu et al.   BMC GENOMICS

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

(2010) Mingming Xin et al.   BMC PLANT BIOLOGY

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

(2010) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)

(2010) Z.J. Yin et al.   GENETICS AND MOLECULAR RESEARCH

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Over-expression of osa-MIR396c decreases salt and alkali stress tolerance

(2010) Peng Gao et al.   PLANTA

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

Widespread regulatory activity of vertebrate microRNA* species

(2010) J.-S. Yang et al.   RNA

HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

(2009) Sabah Kadri et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

(2009) Bo Wei et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

Ectopic expression of miR396 suppressesGRFtarget gene expression and alters leaf growth inArabidopsis

(2009) Dongmei Liu et al.   PHYSIOLOGIA PLANTARUM

Conserved microRNAs and their targets in model grass species Brachypodium distachyon

(2009) Turgay Unver et al.   PLANTA

Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells

(2008) Zuxin Zhang et al.   ANNALS OF BOTANY

Data mining for miRNAs and their targets in the Triticeae

(2008) Ani Dryanova et al.   GENOME

Identification and verification of microRNA in wheat (Triticum aestivum)

(2008) Weibo Jin et al.   JOURNAL OF PLANT RESEARCH

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Dual coding of siRNAs and miRNAs by plant transposable elements

(2008) J. Piriyapongsa et al.   RNA