Identification of DEP domain-containing proteins by a machine learning method and experimental analysis of their expression in human HCC tissues

RGS6 as a Novel Therapeutic Target in CNS Diseases and Cancer

(2016) Katelin E. Ahlers et al.   AAPS Journal

Prediction of cell-penetrating peptides with feature selection techniques

(2016) Hua Tang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

iRSpot-EL: identify recombination spots with an ensemble learning approach

(2016) Bin Liu et al.   BIOINFORMATICS

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework

(2016) Bin Liu et al.   BIOINFORMATICS

A novel machine learning method for cytokine-receptor interaction prediction

(2016) Leyi Wei et al.   COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING

Regulator of G Protein Signaling 7 (RGS7) Can Exist in a Homo-oligomeric Form That Is Regulated by Gαoand R7-binding Protein

(2016) Junior Tayou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Hypoxia Increases IGFBP-1 Phosphorylation Mediated by mTOR Inhibition

(2016) Ian Damerill et al.   MOLECULAR ENDOCRINOLOGY

Truncating PREX2 mutations activate its GEF activity and alter gene expression regulation in NRAS-mutant melanoma

(2016) Yonathan Lissanu Deribe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Suture or Stapling Are Superior in Comparison to Bipolar Sealing for Closing the Bronchi

(2016) Katharina Waubke et al.   THORACIC AND CARDIOVASCULAR SURGEON

Upregulation of PREX2 promotes the proliferation and migration of hepatocellular carcinoma cells via PTEN-AKT signaling

(2016) SHUJIE HE et al.   Oncology Letters

Chemopreventive Effect of Dietary Glutamineon Colitis-Associated Colorectal Cancer Is Associated with Modulation of the DEPTOR/mTOR Signaling Pathway

(2016) Yun Tian et al.   Nutrients

iACP: a sequence-based tool for identifying anticancer peptides

(2016) Wei Chen et al.   Oncotarget

iOri-Human: identify human origin of replication by incorporating dinucleotide physicochemical properties into pseudo nucleotide composition

(2016) Chang-Jian Zhang et al.   Oncotarget

In SilicoPrediction of Gamma-Aminobutyric Acid Type-A Receptors Using Novel Machine-Learning-Based SVM and GBDT Approaches

(2016) Zhijun Liao et al.   Biomed Research International

Construction and Identification of the RNAi Recombinant Lentiviral Vector Targeting Human DEPDC7 Gene

(2016) Zhijun Liao et al.   Interdisciplinary Sciences-Computational Life Sciences

5'-Monophosphate-activated protein kinase (AMPK) improves autophagic activity in diabetes and diabetic complications

(2016) Fan Yao et al.   Acta Pharmaceutica Sinica B

RAMPred: identifying the N1-methyladenosine sites in eukaryotic transcriptomes

(2016) Wei Chen et al.   Scientific Reports

Prediction of phosphothreonine sites in human proteins by fusing different features

(2016) Ya-Wei Zhao et al.   Scientific Reports

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

(2015) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

Familial focal epilepsy with focal cortical dysplasia due toDEPDC5mutations

(2015) Stéphanie Baulac et al.   ANNALS OF NEUROLOGY

DEP Domain Containing 1 is a Novel Diagnostic Marker and Prognostic Predictor for Hepatocellular Carcinoma

(2015) Sheng-Guang Yuan et al.   Asian Pacific Journal of Cancer Prevention

Mapping chemical structure-activity information of HAART-drug cocktails over complex networks of AIDS epidemiology and socioeconomic data of U.S. counties

(2015) Diana María Herrera-Ibatá et al.   BIOSYSTEMS

DEPDC1 is a novel cell cycle related gene that regulates mitotic progression

(2015) Yan Mi et al.   BMB Reports

Comparison of microarray expression profiles between follicular variant of papillary thyroid carcinomas and follicular adenomas of the thyroid

(2015) Hans-Juergen Schulten et al.   BMC GENOMICS

Clinicopathological significance and prognostic value of Wilms' tumor gene expression in colorectal cancer

(2015) Yukinaga Miyata et al.   Cancer Biomarkers

Identification of human drug targets using machine-learning algorithms

(2015) Priyanka Kumari et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Further evidence of DEPDC7 DNA hypomethylation in depression: A study in adult twins

(2015) A. Córdova-Palomera et al.   EUROPEAN PSYCHIATRY

Identification of the GTPase-activating protein DEP domain containing 1B (DEPDC1B) as a transcriptional target of Pitx2

(2015) Di Wu et al.   EXPERIMENTAL CELL RESEARCH

Reference gene selection for real-time quantitative PCR analysis on ovarian cryopreservation by vitrification in mice

(2015) Shan Yuanyuan et al.   JOURNAL OF ASSISTED REPRODUCTION AND GENETICS

Diagnosis of Brain Metastases from Lung Cancer Using a Modified Electromagnetism like Mechanism Algorithm

(2015) Kun-Huang Chen et al.   JOURNAL OF MEDICAL SYSTEMS

Dishevelled Promotes Wnt Receptor Degradation through Recruitment of ZNRF3/RNF43 E3 Ubiquitin Ligases

(2015) Xiaomo Jiang et al.   MOLECULAR CELL

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

The EMBL-EBI bioinformatics web and programmatic tools framework

(2015) Weizhong Li et al.   NUCLEIC ACIDS RESEARCH

PTEN inhibits PREX2-catalyzed activation of RAC1 to restrain tumor cell invasion

(2015) Sarah M. Mense et al.   Science Signaling

Regulation of mTORC1 by PI3K signaling

(2015) Christian C. Dibble et al.   TRENDS IN CELL BIOLOGY

High DEPTOR expression correlates with poor prognosis in patients with esophageal squamous cell carcinoma

(2015) Xu Wu et al.   OncoTargets and Therapy

Point mutations of the mTOR-RHEB pathway in renal cell carcinoma

(2015) Arindam P. Ghosh et al.   Oncotarget

Docosahexaenoic Acid Modulates a HER2-Associated Lipogenic Phenotype, Induces Apoptosis, and Increases Trastuzumab Action in HER2-Overexpressing Breast Carcinoma Cells

(2015) Graziela Rosa Ravacci et al.   Biomed Research International

In Silico Analysis of Sequence–Structure–Function Relationship of the Escherichia coli Methionine Synthase

(2015) Shiv Kumar et al.   Interdisciplinary Sciences-Computational Life Sciences

PTEN inhibits PREX2-catalyzed activation of RAC1 to restrain tumor cell invasion

(2015) Sarah M. Mense et al.   Science Signaling

Deptor Enhances Triple-Negative Breast Cancer Metastasis and Chemoresistance through Coupling to Survivin Expression

(2015) Jenny G. Parvani et al.   NEOPLASIA

Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach

(2015) Bin Liu et al.   PLoS One

An Evolving Role for DEPTOR in Tumor Development and Progression

(2015) Zhiwei Wang et al.   NEOPLASIA

Genome wide in silico analysis of Plasmodium falciparum phosphatome

(2014) Rajan Pandey et al.   BMC GENOMICS

Turning points in the evolution of peroxidase–catalase superfamily: molecular phylogeny of hybrid heme peroxidases

(2014) Marcel Zámocký et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

DEPDC1B Coordinates De-adhesion Events and Cell-Cycle Progression at Mitosis

(2014) Stefano Marchesi et al.   DEVELOPMENTAL CELL

Role ofIFN-λs,IFN-λsrelated genes and theDEPDC5gene in Hepatitis B virus-related liver disease

(2014) N. Ma et al.   JOURNAL OF VIRAL HEPATITIS

Anti-tubulins DEPendably induce apoptosis

(2014) Daniel P. Denning et al.   NATURE CELL BIOLOGY

DEPDC1/LET-99 participates in an evolutionarily conserved pathway for anti-tubulin drug-induced apoptosis

(2014) Ataman Sendoel et al.   NATURE CELL BIOLOGY

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Searching for Genomic Region of High-Fat Diet-Induced Type 2 Diabetes in Mouse Chromosome 2 by Analysis of Congenic Strains

(2014) Misato Kobayashi et al.   PLoS One

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

The Dishevelled, EGL-10 and Pleckstrin (DEP) Domain-Containing Protein DEPDC7 Binds to CARMA2 and CARMA3 Proteins, and Regulates NF-κB Activation

(2014) Egildo Luca D′ Andrea et al.   PLoS One

A novel Alu-mediated microdeletion at 11p13 removes WT1 in a patient with cryptorchidism and azoospermia

(2014) Catarina M Seabra et al.   REPRODUCTIVE BIOMEDICINE ONLINE

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

Nuclear reprogramming of luminal-like breast cancer cells generates Sox2-overexpressing cancer stem-like cellular states harboring transcriptional activation of the mTOR pathway

(2013) BRUNA COROMINAS-FAJA et al.   CELL CYCLE

BinMemPredict: a Web Server and Software for Predicting Membrane Protein Types

(2013) Quan Zou et al.   Current Proteomics

Bioinformatic Prediction of Gene Functions Regulated by Quorum Sensing in the Bioleaching Bacterium Acidithiobacillus ferrooxidans

(2013) Alvaro Banderas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Outgroup effects on root position and tree topology in the AFLP phylogeny of a rapidly radiating lineage of cichlid fish

(2013) Paul C. Kirchberger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mutations in DEPDC5 cause familial focal epilepsy with variable foci

(2013) Leanne M Dibbens et al.   NATURE GENETICS

Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

(2013) Chen Lin et al.   PLoS One

Age-Specific Gene Expression Signatures for Breast Tumors and Cross-Species Conserved Potential Cancer Progression Markers in Young Women

(2013) Dilek Colak et al.   PLoS One

Reviewing and Updating the Major Molecular Markers for Stem Cells

(2013) Raquel Calloni et al.   STEM CELLS AND DEVELOPMENT

DeGNServer: Deciphering Genome-Scale Gene Networks through High Performance Reverse Engineering Analysis

(2013) Jun Li et al.   Biomed Research International

Cancer Peptide Vaccine Therapy Developed from Oncoantigens Identified through Genome-wide Expression Profile Analysis for Bladder Cancer

(2012) W. Obara et al.   JAPANESE JOURNAL OF CLINICAL ONCOLOGY

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(2012) Chia-Hung Yen et al.   MOLECULAR MEDICINE

Identification of Genes Upregulated in ALK-Positive and EGFR/KRAS/ALK-Negative Lung Adenocarcinomas

(2011) H. Okayama et al.   CANCER RESEARCH

Variation in the DEPDC5 locus is associated with progression to hepatocellular carcinoma in chronic hepatitis C virus carriers

(2011) Daiki Miki et al.   NATURE GENETICS

GPR155: Gene organization, multiple mRNA splice variants and expression in mouse central nervous system

(2010) Stefan Trifonov et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Cell-Permeable Peptide DEPDC1-ZNF224 Interferes with Transcriptional Repression and Oncogenicity in Bladder Cancer Cells

(2010) Y. Harada et al.   CANCER RESEARCH

Carboxypeptidase A6 in Zebrafish Development and Implications for VIth Cranial Nerve Pathfinding

(2010) Peter J. Lyons et al.   PLoS One

Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

(2008) S. Girirajan et al.   GENOME RESEARCH