标题
LAF: Logic Alignment Free and its application to bacterial genomes classification
作者
关键词
Supervised classification, Alignment-free sequence comparison, Bacterial taxonomy
出版物
BioData Mining
Volume 8, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-12-09
DOI
10.1186/s13040-015-0073-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Exploration and retrieval of whole-metagenome sequencing samples
- (2014) Sohan Seth et al. BIOINFORMATICS
- Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers
- (2014) Dimitris Polychronopoulos et al. GENOMICS
- Supervised DNA Barcodes species classification: analysis, comparisons and results
- (2014) Emanuel Weitschek et al. BioData Mining
- New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
- (2013) K. Song et al. BRIEFINGS IN BIOINFORMATICS
- MetaRef: a pan-genomic database for comparative and community microbial genomics
- (2013) Katherine Huang et al. NUCLEIC ACIDS RESEARCH
- Real Time Metagenomics: Using k-mers to annotate metagenomes
- (2012) Robert A. Edwards et al. BIOINFORMATICS
- MetaCluster 4.0: A Novel Binning Algorithm for NGS Reads and Huge Number of Species
- (2012) Yi Wang et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio
- (2011) H. C. M. Leung et al. BIOINFORMATICS
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
- (2011) Bo Liu et al. BMC GENOMICS
- Composition Vector Method Based on Maximum Entropy Principle for Sequence Comparison
- (2011) R. H. Chan et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Rule based classifier for the analysis of gene-gene and gene-environment interactions in genetic association studies
- (2011) Thorsten Lehr et al. BioData Mining
- Efficient alignment-free DNA barcode analytics
- (2009) Pavel Kuksa et al. BMC BIOINFORMATICS
- Learning to classify species with barcodes
- (2009) Paola Bertolazzi et al. BMC BIOINFORMATICS
- Estimation of bacterial species phylogeny through oligonucleotide frequency distances
- (2009) Mahoko Takahashi et al. GENOMICS
- Genomic DNA k-mer spectra: models and modalities
- (2009) Benny Chor et al. GENOME BIOLOGY
- Barcodes for genomes and applications
- (2008) Fengfeng Zhou et al. BMC BIOINFORMATICS
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