New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
出版年份 2013 全文链接
标题
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume 15, Issue 3, Pages 343-353
出版商
Oxford University Press (OUP)
发表日期
2013-09-25
DOI
10.1093/bib/bbt067
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Large Local Analysis of the Unaligned Genome and Its Application
- (2013) Lianping Yang et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads
- (2013) Kai Song et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts
- (2012) Jonathan Göke et al. BIOINFORMATICS
- Comparison of metagenomic samples using sequence signatures
- (2012) Bai Jiang et al. BMC GENOMICS
- Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads
- (2012) Zhiyuan Zhai et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms
- (2012) Jiemeng Liu et al. NUCLEIC ACIDS RESEARCH
- Variable length local decoding and alignment-free sequence comparison
- (2012) Gilles Didier et al. THEORETICAL COMPUTER SCIENCE
- New powerful statistics for alignment-free sequence comparison under a pattern transfer model
- (2011) Xuemei Liu et al. JOURNAL OF THEORETICAL BIOLOGY
- A new distribution vector and its application in genome clustering
- (2011) Bo Zhao et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)
- (2011) G. E. Sims et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
- (2011) B. D. Muegge et al. SCIENCE
- The Power of Detecting Enriched Patterns: An HMM Approach
- (2010) Zhiyuan Zhai et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics
- (2010) Lin Wan et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack
- (2010) CHARLES H. CANNON et al. MOLECULAR ECOLOGY
- ChIP-Seq identification of weakly conserved heart enhancers
- (2010) Matthew J Blow et al. NATURE GENETICS
- On finding minimal absent words
- (2009) Armando J Pinho et al. BMC BIOINFORMATICS
- A fungal phylogeny based on 82 complete genomes using the composition vector method
- (2009) Hao Wang et al. BMC EVOLUTIONARY BIOLOGY
- Metagenomic signatures of 86 microbial and viral metagenomes
- (2009) Dana Willner et al. ENVIRONMENTAL MICROBIOLOGY
- Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
- (2009) Qiang Li et al. JOURNAL OF BIOTECHNOLOGY
- Alignment-Free Sequence Comparison (I): Statistics and Power
- (2009) Gesine Reinert et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- ChIP-seq accurately predicts tissue-specific activity of enhancers
- (2009) Axel Visel et al. NATURE
- CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes
- (2009) Z. Xu et al. NUCLEIC ACIDS RESEARCH
- Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method
- (2009) G. A. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution
- (2009) S.-R. Jun et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
- (2009) Gregory E. Sims et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Approximate word matches between two random sequences
- (2008) Conrad J. Burden et al. ANNALS OF APPLIED PROBABILITY
- Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison
- (2008) Qi Dai et al. BIOINFORMATICS
- Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'
- (2008) Qi Dai et al. BMC BIOINFORMATICS
- Empirical distribution of k-word matches in biological sequences
- (2008) Sylvain Forêt et al. PATTERN RECOGNITION
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