Taming free energy landscapes with RNA chaperones

Compact Intermediates in RNA Folding

(2010) Sarah A. Woodson   Annual Review of Biophysics

Intrinsically disordered chaperones in plants and animalsThis paper is one of a selection of papers published in this special issue entitled “Canadian Society of Biochemistry, Molecular & Cellular Biology 52nd Annual Meeting — Protein Folding: Principles and Diseases” and has undergone the Journal's usual peer review process.

(2010) Peter Tompa et al.   Biochemistry and Cell Biology

Protein-Facilitated Folding of Group II Intron Ribozymes

(2010) Olga Fedorova et al.   JOURNAL OF MOLECULAR BIOLOGY

Multistage Collapse of a Bacterial Ribozyme Observed by Time-Resolved Small-Angle X-ray Scattering

(2010) Joon Ho Roh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A ‘garbage can’ for ribosomes: how eukaryotes degrade their ribosomes

(2010) Denis L.J. Lafontaine   TRENDS IN BIOCHEMICAL SCIENCES

mRNA Secondary Structures Fold Sequentially But Exchange Rapidly In Vivo

(2010) Elisabeth M. Mahen et al.   PLOS BIOLOGY

Driving ribosome assembly

(2009) Dieter Kressler et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

The mechanism of ATP-dependent RNA unwinding by DEAD box proteins

(2009) Manuel Hilbert et al.   BIOLOGICAL CHEMISTRY

Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines

(2009) Jonathan P Staley et al.   CURRENT OPINION IN CELL BIOLOGY

Effect of Mg2+ and Na+ on the Nucleic Acid Chaperone Activity of HIV-1 Nucleocapsid Protein: Implications for Reverse Transcription

(2009) My-Nuong Vo et al.   JOURNAL OF MOLECULAR BIOLOGY

Metal Ion Dependence of Cooperative Collapse Transitions in RNA

(2009) Sarvin Moghaddam et al.   JOURNAL OF MOLECULAR BIOLOGY

Motif III in Superfamily 2 “Helicases” Helps Convert the Binding Energy of ATP into a High-Affinity RNA Binding Site in the Yeast DEAD-Box Protein Ded1

(2009) Josette Banroques et al.   JOURNAL OF MOLECULAR BIOLOGY

Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

(2009) Mark Del Campo et al.   MOLECULAR CELL

Effect of salt and RNA structure on annealing and strand displacement by Hfq

(2009) J. F. Hopkins et al.   NUCLEIC ACIDS RESEARCH

A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN

(2009) Anne R. Karow et al.   NUCLEIC ACIDS RESEARCH

C2'-endo nucleotides as molecular timers suggested by the folding of an RNA domain

(2009) S. A. Mortimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How RNA Unfolds and Refolds

(2008) Pan T.X. Li et al.   Annual Review of Biochemistry

Translocation and Unwinding Mechanisms of RNA and DNA Helicases

(2008) Anna Marie Pyle   Annual Review of Biophysics

RNA Folding: Conformational Statistics, Folding Kinetics, and Ion Electrostatics

(2008) Shi-Jie Chen   Annual Review of Biophysics

The post-transcriptional steps of eukaryotic ribosome biogenesis

(2008) A. K. Henras et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Exploring RNA folding one molecule at a time

(2008) Elvin A Alemán et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Folding and unfolding single RNA molecules under tension

(2008) Michael T Woodside et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs

(2008) Inna Shcherbakova et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Tertiary Interactions Determine the Accuracy of RNA Folding

(2008) Seema Chauhan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

(2008) Tadepalli Adilakshmi et al.   NATURE

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation

(2008) Mark A. Ditzler et al.   NUCLEIC ACIDS RESEARCH

DEAD-box proteins can completely separate an RNA duplex using a single ATP

(2008) Y. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

(2008) F. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Kinetic barriers and the role of topology in protein and RNA folding

(2008) Tobin R. Sosnick   PROTEIN SCIENCE

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

(2008) T. J. Soper et al.   RNA

Nucleocapsid protein function in early infection processes

(2008) James A. Thomas et al.   VIRUS RESEARCH

Role of RNA chaperones in virus replication

(2008) Sonia Zúñiga et al.   VIRUS RESEARCH

RNA misfolding and the action of chaperones

(2007) Rick Russell   Frontiers in Bioscience-Landmark

Function of the C-terminal Domain of the DEAD-box Protein Mss116p Analyzed in Vivo and in Vitro

(2007) Georg Mohr et al.   JOURNAL OF MOLECULAR BIOLOGY