Current methodologies for proteomics of bacterial surface-exposed and cell envelope proteins

Approaching the Complexity of Elastase-Digested Membrane Proteomes Using Off-Gel IEF/nLC-MALDI-MS/MS

(2010) Tabiwang N. Arrey et al.   ANALYTICAL CHEMISTRY

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

An automatic method for identifying surface proteins in bacteria: SLEP

(2010) Emanuela Giombini et al.   BMC BIOINFORMATICS

Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique

(2010) Darren Chooneea et al.   BMC MICROBIOLOGY

Cell wall proteome analysis of Mycobacterium smegmatis strain MC2 155

(2010) Zhiguo He et al.   BMC MICROBIOLOGY

The liposoluble proteome of Mycoplasma agalactiae: an insight into the minimal protein complement of a bacterial membrane

(2010) Carla Cacciotto et al.   BMC MICROBIOLOGY

Screening of Predicted Secreted Antigens from Mycobacterium bovis Reveals the Immunodominance of the ESAT-6 Protein Family

(2010) G. J. Jones et al.   INFECTION AND IMMUNITY

Enterotoxigenic Escherichia coli Elicits Immune Responses to Multiple Surface Proteins

(2010) K. Roy et al.   INFECTION AND IMMUNITY

Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics

(2010) Danielle L. Swaney et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Analysis of Cell Surface Membrane Proteins Using Membrane-Impermeable Chemical Probe Coupled with18O Labeling

(2010) Haizhen Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Cell Surface Proteome Profiling for SigB-Dependent Protein Expression in the Human PathogenStaphylococcus aureusvia Biotinylation Approach

(2010) Kristina Hempel et al.   JOURNAL OF PROTEOME RESEARCH

Gel and gel-free proteomics to identify Saccharomyces cerevisiae cell surface proteins

(2010) María Rosa Insenser et al.   Journal of Proteomics

Comprehensive Characterization of Methicillin-resistantStaphylococcus aureussubsp.aureusCOL Secretome by Two-dimensional Liquid Chromatography and Mass Spectrometry

(2010) Shobha Ravipaty et al.   MOLECULAR & CELLULAR PROTEOMICS

Simultaneous Glycan-Peptide Characterization Using Hydrophilic Interaction Chromatography and Parallel Fragmentation by CID, Higher Energy Collisional Dissociation, and Electron Transfer Dissociation MS Applied to theN-Linked Glycoproteome ofCampylobacter jejuni

(2010) Nichollas E. Scott et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification of a Novel Staphylococcus aureus Two-Component Leukotoxin Using Cell Surface Proteomics

(2010) Christy L. Ventura et al.   PLoS One

Prediction of subcellular locations of proteins: Where to proceed?

(2010) Kenichiro Imai et al.   PROTEOMICS

Proteomics uncovers extreme heterogeneity in theStaphylococcus aureusexoproteome due to genomic plasticity and variant gene regulation

(2010) Anne-Kathrin Ziebandt et al.   PROTEOMICS

Changing the phospholipid composition ofStaphylococcus aureuscauses distinct changes in membrane proteome and membrane-sensory regulators

(2010) Susanne Sievers et al.   PROTEOMICS

Improved accuracy of cell surface shaving proteomics in Staphylococcus aureus using a false-positive control

(2010) Nestor Solis et al.   PROTEOMICS

Profiling the surfacome of Staphylococcus aureus

(2010) Annette Dreisbach et al.   PROTEOMICS

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Identification of secreted and surface proteins from Enterococcus faecalis

(2009) Abdellah Benachour et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Campylobacterproteomics: guidelines, challenges and future perspectives

(2009) Nichollas E Scott et al.   Expert Review of Proteomics

Proteomic analysis of cell surface-associated proteins from probioticLactobacillus plantarum

(2009) Hans Christian Beck et al.   FEMS MICROBIOLOGY LETTERS

Proteomics-Based Identification of Anchorless Cell Wall Proteins as Vaccine Candidates against Staphylococcus aureus

(2009) E. Glowalla et al.   INFECTION AND IMMUNITY

Role of the Twin-Arginine Translocation Pathway in Staphylococcus

(2009) L. Biswas et al.   JOURNAL OF BACTERIOLOGY

Wall Teichoic Acid Protects Staphylococcus aureus against Antimicrobial Fatty Acids from Human Skin

(2009) T. Kohler et al.   JOURNAL OF BACTERIOLOGY

Identification of uropathogenic Escherichia coli surface proteins by shotgun proteomics

(2009) Matthew S. Walters et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

(2009) Amol Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Mass Spectrometric Characterization of the Surface-Associated 42 kDa Lipoprotein JlpA as a Glycosylated Antigen in Strains ofCampylobacter jejuni

(2009) Nichollas E. Scott et al.   JOURNAL OF PROTEOME RESEARCH

Quadrupole ion traps

(2009) Raymond E. March   MASS SPECTROMETRY REVIEWS

The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment

(2009) L. Ruiz et al.   MICROBIOLOGY-SGM

Surfome Analysis as a Fast Track to Vaccine Discovery

(2009) Francesco Doro et al.   MOLECULAR & CELLULAR PROTEOMICS

Outside the Unusual Cell Wall of the Hyperthermophilic Archaeon Aeropyrum pernix K1

(2009) Gianna Palmieri et al.   MOLECULAR & CELLULAR PROTEOMICS

Unbiased Quantitation of Escherichia coli Membrane Proteome Using Phase Transfer Surfactants

(2009) Takeshi Masuda et al.   MOLECULAR & CELLULAR PROTEOMICS

A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed

(2009) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Transport of lipopolysaccharide across the cell envelope: the long road of discovery

(2009) Natividad Ruiz et al.   NATURE REVIEWS MICROBIOLOGY

Detergent binding explains anomalous SDS-PAGE migration of membrane proteins

(2009) Arianna Rath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Atomic force microscopy: A powerful molecular toolkit in nanoproteomics

(2009) Yves F. Dufrêne   PROTEOMICS

Quantifying proteins by mass spectrometry: The selectivity of SRM is only part of the problem

(2009) Mark W. Duncan et al.   PROTEOMICS

How specific is my SRM?: The issue of precursor and product ion redundancy

(2009) Jamie Sherman et al.   PROTEOMICS

Comparative analysis of OFFGel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction

(2009) Bruno Manadas et al.   PROTEOMICS

Technologies for plasma membrane proteomics

(2009) Stuart J. Cordwell et al.   PROTEOMICS

Mass spectrometric characterization of theCampylobacter jejuniadherence factor CadF reveals post-translational processing that removes immunogenicity while retaining fibronectin binding

(2009) Nichollas E. Scott et al.   PROTEOMICS

The Key Role of Genomics in Modern Vaccine and Drug Design for Emerging Infectious Diseases

(2009) Kate L. Seib et al.   PLoS Genetics

Outer-membrane proteomic maps and surface-exposed proteins of Legionella pneumophila using cellular fractionation and fluorescent labelling

(2008) A. Khemiri et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Hydrophilic interaction liquid chromatography (HILIC) in proteomics

(2008) Paul J. Boersema et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Multidimensional LC Separations in Shotgun Proteomics

(2008) Akira Motoyama et al.   ANALYTICAL CHEMISTRY

LocateP: Genome-scale subcellular-location predictor for bacterial proteins

(2008) Miaomiao Zhou et al.   BMC BIOINFORMATICS

Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach

(2008) Manuel J Rodríguez-Ortega et al.   BMC GENOMICS

Pathogenesis of Methicillin‐ResistantStaphylococcus aureusInfection

(2008) Rachel J. Gordon et al.   CLINICAL INFECTIOUS DISEASES

Signal peptides direct surface proteins to two distinct envelope locations of Staphylococcus aureus

(2008) Andrea DeDent et al.   EMBO JOURNAL

Roles of type IV pili, flagellum-mediated motility and extracellular DNA in the formation of mature multicellular structures inPseudomonas aeruginosabiofilms

(2008) Kim B. Barken et al.   ENVIRONMENTAL MICROBIOLOGY

Immunoproteomics To Examine Cystic Fibrosis Host Interactions with Extracellular Pseudomonas aeruginosa Proteins

(2008) H. G. Upritchard et al.   INFECTION AND IMMUNITY

Lipoteichoic Acid Is a Major Component of the Bacillus subtilis Periplasm

(2008) V. R. F. Matias et al.   JOURNAL OF BACTERIOLOGY

Characterization of the Accessory Sec System of Staphylococcus aureus

(2008) I. R. Siboo et al.   JOURNAL OF BACTERIOLOGY

Phase Transfer Surfactant-Aided Trypsin Digestion for Membrane Proteome Analysis

(2008) Takeshi Masuda et al.   JOURNAL OF PROTEOME RESEARCH

Mapping of Proteomic Composition on the Surfaces of Bacillus Spores by Atomic Force Microscopy-Based Immunolabeling

(2008) Marco Plomp et al.   LANGMUIR

Complementary Analysis of the Vegetative Membrane Proteome of the Human PathogenStaphylococcus aureus

(2008) Susanne Wolff et al.   MOLECULAR & CELLULAR PROTEOMICS

LysM, a widely distributed protein motif for binding to (peptido)glycans

(2008) Girbe Buist et al.   MOLECULAR MICROBIOLOGY

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Teichoic acids and related cell-wall glycopolymers in Gram-positive physiology and host interactions

(2008) Christopher Weidenmaier et al.   NATURE REVIEWS MICROBIOLOGY

Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins

(2008) Adele R. Blackler et al.   PROTEOMICS

Bacterial membrane proteomics

(2008) Ansgar Poetsch et al.   PROTEOMICS

Monitoring of changes in the membrane proteome during stationary phase adaptation ofBacillus subtilis usingin vivo labeling techniques

(2008) Annette Dreisbach et al.   PROTEOMICS

Shedding & shaving: Disclosure of proteomic expressions on a bacterial face

(2008) Harold Tjalsma et al.   PROTEOMICS

Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria

(2008) Aleksandr Barinov et al.   PROTEOMICS

Developing Antibacterial Vaccines in Genomics and Proteomics Era

(2008) D. K. Kaushik et al.   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

Presence of PPE proteins in Mycobacterium avium subsp. paratuberculosis isolates and their immunogenicity in cattle

(2008) Victoria Newton et al.   VETERINARY MICROBIOLOGY

Identification of membrane-associated proteins fromCampylobacter jejuni strains using complementary proteomics technologies

(2007) Stuart J. Cordwell et al.   PROTEOMICS