Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation

Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments

(2011) David D. L. Minh et al.   JOURNAL OF CHEMICAL PHYSICS

Particle Markov chain Monte Carlo methods

(2010) Christophe Andrieu et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages

(2009) David D. L. Minh et al.   JOURNAL OF CHEMICAL PHYSICS

Accelerating molecular dynamic simulation on graphics processing units

(2009) Mark S. Friedrichs et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations

(2009) Daniel K. Shenfeld et al.   PHYSICAL REVIEW E

Replica exchange with nonequilibrium switches

(2009) A. J. Ballard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimal protocols for minimal work processes in underdamped stochastic thermodynamics

(2008) Alex Gomez-Marin et al.   JOURNAL OF CHEMICAL PHYSICS

Statistically optimal analysis of samples from multiple equilibrium states

(2008) Michael R. Shirts et al.   JOURNAL OF CHEMICAL PHYSICS

Comparison of the serial and parallel algorithms of generalized ensemble simulations: An analytical approach

(2008) Sanghyun Park   PHYSICAL REVIEW E

Computing the optimal protocol for finite-time processes in stochastic thermodynamics

(2008) Holger Then et al.   PHYSICAL REVIEW E

Optimized Free Energies from Bidirectional Single-Molecule Force Spectroscopy

(2008) David D. L. Minh et al.   PHYSICAL REVIEW LETTERS