Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages

Density-dependent analysis of nonequilibrium paths improves free energy estimates

(2009) David D. L. Minh   JOURNAL OF CHEMICAL PHYSICS

Using stochastic models calibrated from nanosecond nonequilibrium simulations to approximate mesoscale information

(2009) Christopher P. Calderon et al.   JOURNAL OF CHEMICAL PHYSICS

Efficient extraction of free energy profiles from nonequilibrium experiments

(2009) Harald Oberhofer et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Far-from-equilibrium measurements of thermodynamic length

(2009) Edward H. Feng et al.   PHYSICAL REVIEW E

Recovery of Free Energy Branches in Single Molecule Experiments

(2009) Ivan Junier et al.   PHYSICAL REVIEW LETTERS

Optimum bias for fast-switching free energy calculations

(2008) Harald Oberhofer et al.   COMPUTER PHYSICS COMMUNICATIONS

Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise

(2008) Paul Maragakis et al.   JOURNAL OF CHEMICAL PHYSICS

Entropy-energy decomposition from nonequilibrium work trajectories

(2008) Jeremiah Nummela et al.   JOURNAL OF CHEMICAL PHYSICS

Optimal protocols for minimal work processes in underdamped stochastic thermodynamics

(2008) Alex Gomez-Marin et al.   JOURNAL OF CHEMICAL PHYSICS

Statistically optimal analysis of samples from multiple equilibrium states

(2008) Michael R. Shirts et al.   JOURNAL OF CHEMICAL PHYSICS

Computing the optimal protocol for finite-time processes in stochastic thermodynamics

(2008) Holger Then et al.   PHYSICAL REVIEW E

Optimized Free Energies from Bidirectional Single-Molecule Force Spectroscopy

(2008) David D. L. Minh et al.   PHYSICAL REVIEW LETTERS

Springs and Speeds in Free Energy Reconstruction from Irreversible Single-Molecule Pulling Experiments†

(2007) David D. L. Minh et al.   JOURNAL OF PHYSICAL CHEMISTRY B