Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments

Free energy reconstruction from steered dynamics without post-processing

(2010) Manuel Athènes et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Measuring the convergence of Monte Carlo free-energy calculations

(2010) Aljoscha M. Hahn et al.   PHYSICAL REVIEW E

Speeding up parallel tempering simulations

(2010) Martin Hasenbusch et al.   PHYSICAL REVIEW E

Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages

(2009) David D. L. Minh et al.   JOURNAL OF CHEMICAL PHYSICS

Measurement of work in single-molecule pulling experiments

(2009) Alessandro Mossa et al.   JOURNAL OF CHEMICAL PHYSICS

Efficient extraction of free energy profiles from nonequilibrium experiments

(2009) Harald Oberhofer et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Recovery of Free Energy Branches in Single Molecule Experiments

(2009) Ivan Junier et al.   PHYSICAL REVIEW LETTERS

Replica exchange with nonequilibrium switches

(2009) A. J. Ballard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy

(2009) Derek Greenfield et al.   PLOS BIOLOGY

Optimized Free Energies from Bidirectional Single-Molecule Force Spectroscopy

(2008) David D. L. Minh et al.   PHYSICAL REVIEW LETTERS