Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds
出版年份 2017 全文链接
标题
Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds
作者
关键词
Genome analysis, Livestock, Cattle, Gene ontologies, Sensory receptors, Genomic databases, Membrane receptor signaling, Sequence assembly tools
出版物
PLoS One
Volume 12, Issue 3, Pages e0173954
出版商
Public Library of Science (PLoS)
发表日期
2017-03-22
DOI
10.1371/journal.pone.0173954
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes
- (2015) Ashutosh Das et al. BMC GENOMICS
- Whole-Genome Resequencing Analysis of Hanwoo and Yanbian Cattle to Identify Genome-Wide SNPs and Signatures of Selection
- (2015) Jung-Woo Choi et al. MOLECULES AND CELLS
- The Y-chromosome point mutation rate in humans
- (2015) Agnar Helgason et al. NATURE GENETICS
- Revisiting AFLP fingerprinting for an unbiased assessment of genetic structure and differentiation of taurine and zebu cattle
- (2014) Yuri Utsunomiya et al. BMC GENETICS
- Linkage disequilibrium levels in Bos indicus and Bos taurus cattle using medium and high density SNP chip data and different minor allele frequency distributions
- (2014) Ana M. Pérez O’Brien et al. Livestock Science
- Sequencing and annotated analysis of full genome of Holstein breed bull
- (2014) Sulev Kõks et al. MAMMALIAN GENOME
- Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
- (2014) Hans D Daetwyler et al. NATURE GENETICS
- Whole-Genome Analyses of Korean Native and Holstein Cattle Breeds by Massively Parallel Sequencing
- (2014) Jung-Woo Choi et al. PLoS One
- Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage
- (2013) Sandra Jansen et al. BMC GENOMICS
- Analysis of cattle olfactory subgenome: the first detail study on the characteristics of the complete olfactory receptor repertoire of a ruminant
- (2013) Kyooyeol Lee et al. BMC GENOMICS
- Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection
- (2013) Xiaoping Liao et al. GENOME
- Abundant sequence divergence in the native Japanese cattle Mishima-Ushi ( Bos taurus ) detected using whole-genome sequencing
- (2013) Kaoru Tsuda et al. GENOMICS
- Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels
- (2013) Jung-Woo Choi et al. MOLECULES AND CELLS
- Comparative Transcriptome Analysis of Adipose Tissues Reveals that ECM-Receptor Interaction Is Involved in the Depot-Specific Adipogenesis in Cattle
- (2013) Hyun-Jeong Lee et al. PLoS One
- Bovine Mammary Gene Expression Profiling during the Onset of Lactation
- (2013) Yuanyuan Gao et al. PLoS One
- Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping
- (2011) Bujie Zhan et al. BMC GENOMICS
- Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery
- (2011) Paul Stothard et al. BMC GENOMICS
- Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi
- (2011) Ryouka Kawahara-Miki et al. BMC GENOMICS
- Natural genetic variation caused by small insertions and deletions in the human genome
- (2011) R. E. Mills et al. GENOME RESEARCH
- Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges
- (2011) S. J. HELYAR et al. Molecular Ecology Resources
- Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
- (2010) William McLaren et al. BIOINFORMATICS
- Small insertions and deletions (INDELs) in human genomes
- (2010) J. M. Mullaney et al. HUMAN MOLECULAR GENETICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Production systems – An example from Brazil
- (2009) José Bento Sterman Ferraz et al. MEAT SCIENCE
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Development and Characterization of a High Density SNP Genotyping Assay for Cattle
- (2009) Lakshmi K. Matukumalli et al. PLoS One
- The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
- (2009) et al. SCIENCE
- Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery
- (2009) Sebastian H Eck et al. GENOME BIOLOGY
- Implications of ABC transporters on the disposition of typical veterinary medicinal products
- (2008) Jan A. Schrickx et al. EUROPEAN JOURNAL OF PHARMACOLOGY
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now