Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle

Evaluation of copy number variation detection for a SNP array platform

(2014) Xin Zhang et al.   BMC BIOINFORMATICS

Identification of genomic regions associated with feed efficiency in Nelore cattle

(2014) Priscila SN de Oliveira et al.   BMC GENETICS

RGK protein-mediated impairment of slow depolarization- dependent Ca2+entry into developing myotubes

(2014) Christin F Romberg et al.   Channels

Genetic analysis of tissue glutathione concentrations and redox balance

(2014) Yang Zhou et al.   FREE RADICAL BIOLOGY AND MEDICINE

Validation of biomarkers for loin meat quality (M. longissimus) of pigs

(2014) M. Pierzchala et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

µ-Calpain, calpastatin, and growth hormone receptor genetic effects on preweaning performance, carcass quality traits, and residual variance of tenderness in Angus cattle selected to increase minor haplotype and allele frequencies1,2,3

(2014) R. G. Tait et al.   JOURNAL OF ANIMAL SCIENCE

Enhancing Genome-Wide Copy Number Variation Identification by High Density Array CGH Using Diverse Resources of Pig Breeds

(2014) Jiying Wang et al.   PLoS One

Massive screening of copy number population-scale variation in Bos taurus genome

(2013) Francesco Cicconardi et al.   BMC GENOMICS

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

(2013) Li Jiang et al.   BMC GENOMICS

Genome-wide association of meat quality traits and tenderness in swine1,2

(2013) D. J. Nonneman et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle

(2013) Jung-Woo Choi et al.   MAMMALIAN GENOME

Copy number variations of MICAL-L2 shaping gene expression contribute to different phenotypes of cattle

(2013) Yao Xu et al.   MAMMALIAN GENOME

Biomarkers of meat tenderness: Present knowledge and perspectives in regards to our current understanding of the mechanisms involved

(2013) Ahmed Ouali et al.   MEAT SCIENCE

Small heat shock proteins and their role in meat tenderness: A review

(2013) D. Lomiwes et al.   MEAT SCIENCE

Calcium and potassium content in beef: Influences on tenderness and associations with molecular markers in Nellore cattle

(2013) Polyana Cristine Tizioto et al.   MEAT SCIENCE

Heat shock and structural proteins associated with meat tenderness in Nellore beef cattle, a Bos indicus breed

(2013) Minos Esperândio Carvalho et al.   MEAT SCIENCE

Genome scan for meat quality traits in Nelore beef cattle

(2013) P. C. Tizioto et al.   PHYSIOLOGICAL GENOMICS

Reciprocal regulation of PKA and Rac signaling

(2013) V. A. Bachmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

cAMP signaling in skeletal muscle adaptation: hypertrophy, metabolism, and regeneration

(2012) Rebecca Berdeaux et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Copy number variation in the genomes of domestic animals

(2012) A. Clop et al.   ANIMAL GENETICS

CNVRuler: a copy number variation-based case–control association analysis tool

(2012) Ji-Hong Kim et al.   BIOINFORMATICS

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array

(2012) Yali Hou et al.   BMC GENOMICS

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

Copy number variation in the cattle genome

(2012) George E. Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake

(2012) Yali Hou et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Using Family Data as a Verification Standard to Evaluate Copy Number Variation Calling Strategies for Genetic Association Studies

(2012) Xiaojing Zheng et al.   GENETIC EPIDEMIOLOGY

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Love me tender: An Omics window on the bovine meat tenderness network

(2012) Angelo D'Alessandro et al.   Journal of Proteomics

Chianina beef tenderness investigated through integrated Omics

(2012) Angelo D'Alessandro et al.   Journal of Proteomics

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era

(2012) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification of Copy Number Variations in Chinese Holstein

(2012) Li Jiang et al.   PLoS One

miRNA-dysregulation associated with tenderness variation induced by acute stress in Angus cattle

(2012) Chunping Zhao et al.   Journal of Animal Science and Biotechnology

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

(2011) Bujie Zhan et al.   BMC GENOMICS

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Genomic characteristics of cattle copy number variations

(2011) Yali Hou et al.   BMC GENOMICS

A high-resolution integrated map of copy number polymorphisms within and between breeds of the modern domesticated dog

(2011) Thomas J Nicholas et al.   BMC GENOMICS

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle

(2011) Yali Hou et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Analysis of copy number variants in the cattle genome

(2011) James W. Kijas et al.   GENE

MEAT SCIENCE AND MUSCLE BIOLOGY SYMPOSIUM: Manipulating meat tenderness by increasing the turnover of intramuscular connective tissue1,2

(2011) P. P. Purslow et al.   JOURNAL OF ANIMAL SCIENCE

Effects of limited and excess protein intakes of pregnant gilts on carcass quality and cellular properties of skeletal muscle and subcutaneous adipose tissue in fattening pigs1,2

(2011) C. Rehfeldt et al.   JOURNAL OF ANIMAL SCIENCE

Increased Number of MicroRNA Target Sites in Genes Encoded in CNV Regions. Evidence for an Evolutionary Genomic Interaction

(2011) K. Felekkis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Muscle transcriptomic analyses in Angus cattle with divergent tenderness

(2011) Chunping Zhao et al.   MOLECULAR BIOLOGY REPORTS

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

The roles of the actin-myosin interaction and proteolysis in tenderization during the aging of chicken muscle

(2011) S. Li et al.   POULTRY SCIENCE

Inferring combined CNV/SNP haplotypes from genotype data

(2010) Shu-Yi Su et al.   BIOINFORMATICS

Characterization of Diaphanous-related formin FMNL2 in human tissues

(2010) Maria Gardberg et al.   BMC CELL BIOLOGY

A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle

(2010) Stacey N Meyers et al.   BMC GENOMICS

Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs

(2010) Eyal Seroussi et al.   BMC GENOMICS

Copy number variation in the bovine genome

(2010) João Fadista et al.   BMC GENOMICS

An initial comparative map of copy number variations in the goat (Capra hircus) genome

(2010) Luca Fontanesi et al.   BMC GENOMICS

Identification of copy number variations and common deletion polymorphisms in cattle

(2010) Joon Bae et al.   BMC GENOMICS

Association of SNPs on CAPN1 and CAST genes with tenderness in Nellore cattle

(2010) L.F.B. Pinto et al.   GENETICS AND MOLECULAR RESEARCH

Analysis of copy number variations among diverse cattle breeds

(2010) G. E. Liu et al.   GENOME RESEARCH

Long Range Interactions RegulateIgf2Gene Transcription during Skeletal Muscle Differentiation

(2010) Damir T. Alzhanov et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Accurate and objective copy number profiling using real-time quantitative PCR

(2010) Barbara D’haene et al.   METHODS

Elusive Copy Number Variation in the Mouse Genome

(2010) Avigail Agam et al.   PLoS One

A Novel Mutation in the Maternally Imprinted PEG3 Domain Results in a Loss of MIMT1 Expression and Causes Abortions and Stillbirths in Cattle (Bos taurus)

(2010) Krzysztof Flisikowski et al.   PLoS One

Effect of single nucleotide polymorphisms ofCAPN1andCASTgenes on meat traits in Nellore beef cattle (Bos indicus) and in their crosses withBos taurus

(2009) R. A. Curi et al.   ANIMAL GENETICS

Copy number variation in the human genome and its implication in autoimmunity

(2009) H. Schaschl et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

CNV discovery using SNP genotyping arrays

(2009) C. Yau et al.   CYTOGENETIC AND GENOME RESEARCH

The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells

(2009) Patrick Cahan et al.   NATURE GENETICS

Segmental copy number variation shapes tissue transcriptomes

(2009) Charlotte N Henrichsen et al.   NATURE GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Extensive Copy-Number Variation of the Human Olfactory Receptor Gene Family

(2008) Janet M. Young et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Rem Inhibits Skeletal Muscle EC Coupling by Reducing the Number of Functional L-Type Ca2+ Channels

(2008) R.A. Bannister et al.   BIOPHYSICAL JOURNAL

Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken

(2008) Martin G Elferink et al.   BMC GENOMICS

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

(2008) B. J. Norris et al.   GENOME RESEARCH

Integrated detection and population-genetic analysis of SNPs and copy number variation

(2008) Steven A McCarroll et al.   NATURE GENETICS

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms

(2008) Sharon J. Diskin et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Copy-Number Variation Map Reflects Human Olfactory Receptor Diversity and Evolution

(2008) Yehudit Hasin et al.   PLoS Genetics