dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42

Regulation of Bacterial Virulence by Csr (Rsm) Systems

(2015) Christopher A. Vakulskas et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Small Regulatory RNA-Induced Growth Rate Heterogeneity of Bacillus subtilis

(2015) Ruben A. T. Mars et al.   PLoS Genetics

Collagen-Like Proteins (ClpA, ClpB, ClpC, and ClpD) Are Required for Biofilm Formation and Adhesion to Plant Roots by Bacillus amyloliquefaciens FZB42

(2015) Xia Zhao et al.   PLoS One

READemption--a tool for the computational analysis of deep-sequencing-based transcriptome data

(2014) K. U. Forstner et al.   BIOINFORMATICS

Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli

(2014) Maureen K. Thomason et al.   JOURNAL OF BACTERIOLOGY

Amylocyclicin, a Novel Circular Bacteriocin Produced by Bacillus amyloliquefaciens FZB42

(2014) R. Scholz et al.   JOURNAL OF BACTERIOLOGY

Impact of Hfq on the Bacillus subtilis Transcriptome

(2014) Hermann Hämmerle et al.   PLoS One

Small RNAs in the control of RpoS, CsgD, and biofilm architecture ofEscherichia coli

(2014) Franziska Mika et al.   RNA Biology

Small regulatory RNAs from low-GC Gram-positive bacteria

(2014) Sabine Brantl et al.   RNA Biology

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

(2013) Sandra Wiegand et al.   BMC GENOMICS

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

SporeWeb: an interactive journey through the complete sporulation cycle ofBacillus subtilis

(2013) Robyn T. Eijlander et al.   NUCLEIC ACIDS RESEARCH

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

Rapid and robust signaling in the CsrA cascade via RNA-protein interactions and feedback regulation

(2013) D. N. Adamson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

(2013) Teresa Cortes et al.   Cell Reports

High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates

(2013) Gaurav Dugar et al.   PLoS Genetics

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

(2012) Ben Fan et al.   BMC MICROBIOLOGY

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems

(2012) Tony Romeo et al.   ENVIRONMENTAL MICROBIOLOGY

Two-Component Response Regulator DegU Controls the Expression of Bacilysin in Plant-Growth-Promoting BacteriumBacillus amyloliquefaciensFZB42

(2012) Aruljothi Mariappan et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets

(2012) Yi Shao et al.   MOLECULAR MICROBIOLOGY

A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli

(2012) Maureen K. Thomason et al.   MOLECULAR MICROBIOLOGY

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

(2012) Nina Sesto et al.   NATURE REVIEWS MICROBIOLOGY

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

BSRD: a repository for bacterial small regulatory RNA

(2012) Lei Li et al.   NUCLEIC ACIDS RESEARCH

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling

(2012) Donghyuk Kim et al.   PLoS Genetics

Genome-wide detection of novel regulatory RNAs in E. coli

(2011) R. Raghavan et al.   GENOME RESEARCH

Efficient colonization of plant roots by the plant growth promoting bacterium Bacillus amyloliquefaciens FZB42, engineered to express green fluorescent protein

(2011) Ben Fan et al.   JOURNAL OF BIOTECHNOLOGY

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Base-Pairing RNA Spot 42 Participates in a Multioutput Feedforward Loop to Help Enact Catabolite Repression in Escherichia coli

(2011) Chase L. Beisel et al.   MOLECULAR CELL

The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal

(2011) Elisabeth Sonnleitner et al.   MOLECULAR MICROBIOLOGY

Circuitry linking the Csr and stringent response global regulatory systems

(2011) Adrianne N. Edwards et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

(2011) Cornelius Schmidtke et al.   NUCLEIC ACIDS RESEARCH

Plantazolicin A and B: Structure Elucidation of Ribosomally Synthesized Thiazole/Oxazole Peptides fromBacillus amyloliquefaciensFZB42

(2011) Bahar Kalyon et al.   ORGANIC LETTERS

The transcriptional landscape of Chlamydia pneumoniae

(2011) Marco Albrecht et al.   GENOME BIOLOGY

Plantazolicin, a Novel Microcin B17/Streptolysin S-Like Natural Product from Bacillus amyloliquefaciens FZB42

(2010) R. Scholz et al.   JOURNAL OF BACTERIOLOGY

Translational Regulation of Gene Expression by an Anaerobically Induced Small Non-coding RNA in Escherichia coli

(2010) Anders Boysen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reprogramming of anaerobic metabolism by the FnrS small RNA

(2010) Sylvain Durand et al.   MOLECULAR MICROBIOLOGY

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes

(2009) Edmund Loh et al.   CELL

CodY Activates Transcription of a Small RNA in Bacillus subtilis

(2009) H. Preis et al.   JOURNAL OF BACTERIOLOGY

The transcriptionally active regions in the genome ofBacillus subtilis

(2009) Simon Rasmussen et al.   MOLECULAR MICROBIOLOGY

Identification of small RNAs inMycobacterium tuberculosis

(2009) Kristine B. Arnvig et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

A Genome-Wide Analysis of Small Regulatory RNAs in the Human Pathogen Group A Streptococcus

(2009) Nataly Perez et al.   PLoS One

Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis

(2008) Shinichi Saito et al.   GENE

Difficidin and bacilysin produced by plant-associated Bacillus amyloliquefaciens are efficient in controlling fire blight disease

(2008) X.H. Chen et al.   JOURNAL OF BIOTECHNOLOGY

Small non-coding RNAs in Caulobacter crescentus

(2008) Stephen G. Landt et al.   MOLECULAR MICROBIOLOGY

Small non-coding RNAs in Streptomyces coelicolor

(2008) Julia P. Swiercz et al.   NUCLEIC ACIDS RESEARCH

DOOR: a database for prokaryotic operons

(2008) Fenglou Mao et al.   NUCLEIC ACIDS RESEARCH