Profound Impact of Hfq on Nutrient Acquisition, Metabolism and Motility in the Plant Pathogen Agrobacterium tumefaciens

Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function

(2014) Quan Zeng et al.   BMC GENOMICS

The role of RNases in the regulation of small RNAs

(2014) Margarida Saramago et al.   CURRENT OPINION IN MICROBIOLOGY

Involvement of Enterococcus faecalis Small RNAs in Stress Response and Virulence

(2014) Charlotte Michaux et al.   INFECTION AND IMMUNITY

Assembly and stoichiometry of FliF and FlhA inSalmonellaflagellar basal body

(2014) Yusuke V. Morimoto et al.   MOLECULAR MICROBIOLOGY

The RNA Chaperone Hfq Impacts Growth, Metabolism and Production of Virulence Factors in Yersinia enterocolitica

(2014) Tamara Kakoschke et al.   PLoS One

Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region

(2014) Aaron Overlöper et al.   RNA Biology

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006

(2013) Nabil M Wilf et al.   BMC GENOMICS

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021

(2013) Jan-Philip Schlüter et al.   BMC GENOMICS

Global Small RNA Chaperone Hfq and Regulatory Small RNAs Are Important Virulence Regulators in Erwinia amylovora

(2013) Q. Zeng et al.   JOURNAL OF BACTERIOLOGY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens

(2013) Keunsub Lee et al.   PLoS One

Impact of Hfq on Global Gene Expression and Intracellular Survival in Brucella melitensis

(2013) Mingquan Cui et al.   PLoS One

Structure and RNA-binding properties of the bacterial LSm protein Hfq

(2013) Evelyn Sauer   RNA Biology

Cycling of RNAs on Hfq

(2013) E. Gerhart H. Wagner   RNA Biology

Small RNA sX13: A Multifaceted Regulator of Virulence in the Plant Pathogen Xanthomonas

(2013) Cornelius Schmidtke et al.   PLoS Pathogens

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

(2012) I. Wilms et al.   JOURNAL OF BACTERIOLOGY

Riboswitch (T-box)-mediated Control of tRNA-dependent Amidation inClostridium acetobutylicumRationalizes Gene and Pathway Redundancy for Asparagine and Asparaginyl-tRNAAsnSynthesis

(2012) Nizar Y. Saad et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The quorum-sensing protein TraR of Agrobacterium tumefaciens is susceptible to intrinsic and TraM-mediated proteolytic instability

(2012) Esther D. Costa et al.   MOLECULAR MICROBIOLOGY

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011

(2012) Patricio Sobrero et al.   PLoS One

Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition

(2012) E. Sauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidences of autoregulation of hfq expression in Sinorhizobium meliloti strain 2011

(2011) Patricio Sobrero et al.   ARCHIVES OF MICROBIOLOGY

Despite Similar Binding to the Hfq Protein Regulatory RNAs Widely Differ in Their Competition Performance

(2011) Mikołaj Olejniczak   BIOCHEMISTRY

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA

(2011) Cynthia M. Sharma et al.   MOLECULAR MICROBIOLOGY

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides

(2011) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Mutation of GOGAT prevents pea bacteroid formation and N2 fixation by globally downregulating transport of organic nitrogen sources

(2011) G. Mulley et al.   MOLECULAR MICROBIOLOGY

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa

(2010) Omar Torres-Quesada et al.   BMC MICROBIOLOGY

The role of Hfq in bacterial pathogens

(2010) Yanjie Chao et al.   CURRENT OPINION IN MICROBIOLOGY

New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation

(2010) Andrea Pitzschke et al.   EMBO JOURNAL

The Sinorhizobium meliloti RNA Chaperone Hfq Mediates Symbiosis of S. meliloti and Alfalfa

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Proteomic Alterations Explain Phenotypic Changes in Sinorhizobium meliloti Lacking the RNA Chaperone Hfq

(2010) L. Barra-Bily et al.   JOURNAL OF BACTERIOLOGY

Proteomic and transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant

(2010) Sonja Klüsener et al.   MOLECULAR GENETICS AND GENOMICS

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

Role of theSinorhizobium melilotiGlobal Regulator Hfq in Gene Regulation and Symbiosis

(2010) Mengsheng Gao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

(2010) C. Lorenz et al.   NUCLEIC ACIDS RESEARCH

Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway

(2010) Sandra C. Viegas et al.   NUCLEIC ACIDS RESEARCH

iTRAQ Protein Profile Analysis of Arabidopsis Roots Reveals New Aspects Critical for Iron Homeostasis

(2010) P. Lan et al.   PLANT PHYSIOLOGY

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

(2010) Alexandra Sittka et al.   RNA Biology

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

(2009) T. M. Link et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Dual Role of FtsH in Regulating Lipopolysaccharide Biosynthesis in Escherichia coli

(2008) C. Katz et al.   JOURNAL OF BACTERIOLOGY

Reconstitution and Analysis of the Multienzyme Escherichia coli RNA Degradosome

(2008) Jonathan A.R. Worrall et al.   JOURNAL OF MOLECULAR BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

The RNA binding protein Hfq interacts specifically with tRNAs

(2008) T. Lee et al.   RNA

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

(2008) T. J. Soper et al.   RNA

Comparative genomic analysis of T-box regulatory systems in bacteria

(2008) A. G. Vitreschak et al.   RNA

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics