RNA Deep Sequencing Reveals Novel Candidate Genes and Polymorphisms in Boar Testis and Liver Tissues with Divergent Androstenone Levels

A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6

(2012) Naomi Duijvesteijn et al.   BMC GENETICS

Genome-wide association scan and phased haplotype construction for quantitative trait loci affecting boar taint in three pig breeds

(2012) Vivi R Gregersen et al.   BMC GENOMICS

Different scalding techniques do not affect boar taint

(2012) Daniel Mörlein et al.   MEAT SCIENCE

Nutritional Influences on Skatole Formation and Skatole Metabolism in the Pig

(2012) Raffael Wesoly et al.   Animals

Local and global factors affecting RNA sequencing analysis

(2011) Edward Sendler et al.   ANALYTICAL BIOCHEMISTRY

Development of a Candidate Reference Method for the Simultaneous Quantitation of the Boar Taint Compounds Androstenone, 3α-Androstenol, 3β-Androstenol, Skatole, and Indole in Pig Fat by Means of Stable Isotope Dilution Analysis–Headspace Solid-Phase Microextraction–Gas Chromatography/Mass Spectrometry

(2011) Jochen Fischer et al.   ANALYTICAL CHEMISTRY

Influence of breed and slaughter weight on boar taint prevalence in entire male pigs

(2011) M. Aluwé et al.   Animal

Expression levels of 25 genes in liver and testis located in a QTL region for androstenone on SSC7q1.2

(2011) A. Robic et al.   ANIMAL GENETICS

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

(2011) Anna Esteve-Codina et al.   BMC GENOMICS

Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids

(2011) Eli Grindflek et al.   BMC GENOMICS

A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing

(2011) Congying Chen et al.   BMC GENOMICS

RNA-seq: technical variability and sampling

(2011) Lauren M McIntyre et al.   BMC GENOMICS

Integrating expression profiling and whole-genome association for dissection of fat traits in a porcine model

(2011) S. Ponsuksili et al.   JOURNAL OF LIPID RESEARCH

Polymorphism and expression of the porcine Tenascin C gene associated with meat and carcass quality

(2011) A. Kayan et al.   MEAT SCIENCE

Investigation on interferon alpha-inducible protein 6 (IFI6) gene as a candidate for meat and carcass quality in pig

(2011) A. Kayan et al.   MEAT SCIENCE

Review of analytical methods to measure boar taint compounds in porcine adipose tissue: The need for harmonised methods

(2011) J.-E. Haugen et al.   MEAT SCIENCE

Association and expression quantitative trait loci (eQTL) analysis of porcine AMBP, GC and PPP1R3B genes with meat quality traits

(2011) Mehmet Ulas Cinar et al.   MOLECULAR BIOLOGY REPORTS

Examination of Testicular Gene Expression Patterns in Yorkshire Pigs with High and Low Levels of Boar Taint

(2010) Maxwell C. K. Leung et al.   ANIMAL BIOTECHNOLOGY

Transcriptional Profiling by Deep Sequencing Identifies Differences in mRNA Transcript Abundance in In Vivo-Derived Versus In Vitro-Cultured Porcine Blastocyst Stage Embryos1

(2010) Bethany K. Bauer et al.   BIOLOGY OF REPRODUCTION

Transcript profiling of candidate genes in testis of pigs exhibiting large differences in androstenone levels

(2010) Eli Grindflek et al.   BMC GENETICS

Inositol Pyrophosphates Inhibit Akt Signaling, Thereby Regulating Insulin Sensitivity and Weight Gain

(2010) Anutosh Chakraborty et al.   CELL

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Boar Taint Detection Using Parasitoid Biosensors

(2010) Felix Wäckers et al.   JOURNAL OF FOOD SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Overactive Beta-Catenin Signaling Causes Testicular Sertoli Cell Tumor Development in the Mouse1

(2009) Hao Chang et al.   BIOLOGY OF REPRODUCTION

RNA-seq: from technology to biology

(2009) Samuel Marguerat et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Wnt signaling promotes proliferation and stemness regulation of spermatogonial stem/progenitor cells

(2009) Nady Golestaneh et al.   REPRODUCTION

Performances, meat quality and boar taint of castrates and entire male pigs fed a standard and a raw potato starch-enriched diet

(2008) C. Pauly et al.   Animal

Gene expression profiles in liver of pigs with extreme high and low levels of androstenone

(2008) Maren Moe et al.   BMC Veterinary Research

Genetic and metabolic aspects of androstenone and skatole deposition in pig adipose tissue: A review

(2008) Annie Robic et al.   GENETICS SELECTION EVOLUTION

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

A genome scan for quantitative trait loci affecting male reproductive traits in a White Duroc × Chinese Erhualian resource population1

(2008) D. R. Ren et al.   JOURNAL OF ANIMAL SCIENCE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS