Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Development and mapping of SNP assays in allotetraploid cotton

(2012) Robert L. Byers et al.   THEORETICAL AND APPLIED GENETICS

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

(2011) Alexis Dereeper et al.   BMC BIOINFORMATICS

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

(2011) Emilie Villar et al.   BMC GENOMICS

A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.)

(2011) Doug J Hinchliffe et al.   BMC GENOMICS

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

(2011) Shaogui Guo et al.   BMC GENOMICS

An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis

(2011) Qi Tang et al.   BMC GENOMICS

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Identification, characterization and interpretation of single-nucleotide sequence variation in allopolyploid crop species

(2011) Sukhjiwan Kaur et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide transcriptomic analysis of cotton under drought stress reveal significant down-regulation of genes and pathways involved in fibre elongation and up-regulation of defense responsive genes

(2011) Kethireddy Venkata Padmalatha et al.   PLANT MOLECULAR BIOLOGY

A Novel Isoform of Sucrose Synthase Is Targeted to the Cell Wall during Secondary Cell Wall Synthesis in Cotton Fiber

(2011) Elizabeth Brill et al.   PLANT PHYSIOLOGY

cDNA-AFLP-based genetical genomics in cotton fibers

(2011) Michel Claverie et al.   THEORETICAL AND APPLIED GENETICS

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

(2010) Ryan A Rapp et al.   BMC BIOLOGY

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types

(2010) Shaogui Guo et al.   BMC GENOMICS

Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population

(2010) Jean-Marc Lacape et al.   BMC PLANT BIOLOGY

Phylogenetically Distinct Cellulose Synthase Genes Support Secondary Wall Thickening in Arabidopsis Shoot Trichomes and Cotton Fiber

(2010) Lissete Betancur et al.   Journal of Integrative Plant Biology

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

GhMYB25-like: a key factor in early cotton fibre development

(2010) Sally-Ann Walford et al.   PLANT JOURNAL

Evidence That High Activity of Vacuolar Invertase Is Required for Cotton Fiber and Arabidopsis Root Elongation through Osmotic Dependent and Independent Pathways, Respectively

(2010) L. Wang et al.   PLANT PHYSIOLOGY

Single-Nucleotide Polymorphism Genotyping in Mapping Populations via Genomic Reduction and Next-Generation Sequencing: Proof of Concept

(2010) Peter J. Maughan et al.   Plant Genome

Sequencing and Utilization of the Gossypium Genomes

(2010) Andrew H. Paterson et al.   Tropical Plant Biology

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development

(2009) Fiammetta Alagna et al.   BMC GENOMICS

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)

(2009) B. Chaudhary et al.   GENETICS

Proteomic Identification of Differentially Expressed Proteins in theLigon lintlessMutant of Upland Cotton (Gossypium hirsutumL.)

(2009) Pi-Ming Zhao et al.   JOURNAL OF PROTEOME RESEARCH

Transcript Profiling During Fiber Development Identifies Pathways in Secondary Metabolism and Cell Wall Structure That May Contribute to Cotton Fiber Quality

(2009) Yves Al-Ghazi et al.   PLANT AND CELL PHYSIOLOGY

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

Double feature selection and cluster analyses in mining of microarray data from cotton

(2008) Magdy S Alabady et al.   BMC GENOMICS

Comparative Proteomic Analysis Provides New Insights into the Fiber Elongating Process in Cotton

(2008) Yi-Wei Yang et al.   JOURNAL OF PROTEOME RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Characterization of 19 novel cottonFLAgenes and their expression profiling in fiber development and in response to phytohormones and salt stress

(2008) Geng-Qing Huang et al.   PHYSIOLOGIA PLANTARUM

Genes Encoding Fasciclin-Like Arabinogalactan Proteins are Specifically Expressed During Cotton Fiber Development

(2008) Diqiu Liu et al.   PLANT MOLECULAR BIOLOGY REPORTER

The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism

(2008) Ran Hovav et al.   PLoS Genetics

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant

(2008) R. Hovav et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA