RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

(2010) David Cohen et al.   BMC GENOMICS

Geographical and historical determinants of microsatellite variation in Eucalyptus pilularis

(2010) Mervyn Shepherd et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Next-Generation Sequencing Techniques for Eukaryotic Microorganisms: Sequencing-Based Solutions to Biological Problems

(2010) Minou Nowrousian   EUKARYOTIC CELL

Phloem sap and leaf δ13C, carbohydrates, and amino acid concentrations in Eucalyptus globulus change systematically according to flooding and water deficit treatment

(2010) Andrew Merchant et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Selected Set of EST-Derived Microsatellites, Polymorphic and Transferable across 6 Species of Eucalyptus

(2010) Danielle A. Faria et al.   JOURNAL OF HEREDITY

Transcriptome changes in the cambial region of poplar (Populus alba L.) in response to water deficit

(2010) M. Berta et al.   PLANT BIOLOGY

Intraspecific variation in the Populus balsamifera drought transcriptome

(2010) ERIN T. HAMANISHI et al.   PLANT CELL AND ENVIRONMENT

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Novel software package for cross-platform transcriptome analysis (CPTRA)

(2009) Xin Zhou et al.   BMC BIOINFORMATICS

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing

(2009) Julio C Vega-Arreguín et al.   BMC GENOMICS

Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

(2009) Carsten Külheim et al.   BMC GENOMICS

Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development

(2009) Fiammetta Alagna et al.   BMC GENOMICS

A new genomic resource dedicated to wood formation in Eucalyptus

(2009) David Rengel et al.   BMC PLANT BIOLOGY

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

A Focus on Natural Variation for Abiotic Constraints Response in the Model Species Arabidopsis thaliana

(2009) Valérie Lefebvre et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Making the most of drought and salinity transcriptomics

(2009) MICHAEL K. DEYHOLOS   PLANT CELL AND ENVIRONMENT

Shifts in biomass and resource allocation patterns following defoliation in Eucalyptus globulus growing with varying water and nutrient supplies

(2009) A. Eyles et al.   TREE PHYSIOLOGY

Evolving gene expression: from G to E to G×E

(2009) Andrea Hodgins-Davis et al.   TRENDS IN ECOLOGY & EVOLUTION

Calcium as a versatile plant signal transducer under soil water stress

(2008) Shao Hong-Bo et al.   BIOESSAYS

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio

(2008) M. J Hegarty et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Kinetics of drought-induced pathogenesis-related proteins and its physiological significance in white clover leaves

(2008) Bok-Rye Lee et al.   PHYSIOLOGIA PLANTARUM

Distinct Light-Initiated Gene Expression and Cell Cycle Programs in the Shoot Apex and Cotyledons of Arabidopsis

(2008) E. Lopez-Juez et al.   PLANT CELL

Abiotic stress response in plants: When post-transcriptional and post-translational regulations control transcription

(2008) Elisabetta Mazzucotelli et al.   PLANT SCIENCE

Development and functional annotation of an 11,303-EST collection from Eucalyptus for studies of cold tolerance

(2008) Guylaine Keller et al.   Tree Genetics & Genomes

Microsatellite diversity and genetic structure of the commercially important tropical tree species Eucalyptus urophylla, endemic to seven islands in eastern Indonesia

(2008) Kitt G. Payn et al.   Tree Genetics & Genomes

Production and carbon allocation in a clonal Eucalyptus plantation with water and nutrient manipulations

(2007) Jose Luiz Stape et al.   FOREST ECOLOGY AND MANAGEMENT