Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

LEA Proteins During Water Stress: Not Just for Plants Anymore

(2011) Steven C. Hand et al.   Annual Review of Physiology

Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress

(2010) Vijay Joshi et al.   AMINO ACIDS

Structural annotation of equine protein-coding genes determined by mRNA sequencing

(2010) S. J. Coleman et al.   ANIMAL GENETICS

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Early abscisic acid signal transduction mechanisms: newly discovered components and newly emerging questions

(2010) K. E. Hubbard et al.   GENES & DEVELOPMENT

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

(2010) V. M. Bruno et al.   GENOME RESEARCH

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Monitoring the Expression of Maize Genes in Developing Kernels under Drought Stress using Oligo-microarray

(2010) Meng Luo et al.   Journal of Integrative Plant Biology

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Unraveling the paradoxes of plant hormone signaling integration

(2010) Yvon Jaillais et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development

(2010) H. Zhang et al.   PLANT CELL

SIZ1 Regulation of Phosphate Starvation-Induced Root Architecture Remodeling Involves the Control of Auxin Accumulation

(2010) K. Miura et al.   PLANT PHYSIOLOGY

AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling

(2010) Karl-Josef Dietz et al.   PROTOPLASMA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The interface between metabolic and stress signalling

(2009) S. J. Hey et al.   ANNALS OF BOTANY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS

Fructan and its relationship to abiotic stress tolerance in plants

(2009) David P. Livingston et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco

(2009) G. Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses

(2009) Marta de Torres Zabala et al.   PLANT JOURNAL

Genome-wide transcriptome analysis of two maize inbred lines under drought stress

(2009) Jun Zheng et al.   PLANT MOLECULAR BIOLOGY

Drought and Abscisic Acid Effects on Aquaporin Content Translate into Changes in Hydraulic Conductivity and Leaf Growth Rate: A Trans-Scale Approach

(2009) B. Parent et al.   PLANT PHYSIOLOGY

Expression of the Arabidopsis Mutant abi1 Gene Alters Abscisic Acid Sensitivity, Stomatal Development, and Growth Morphology in Gray Poplars

(2009) M. Arend et al.   PLANT PHYSIOLOGY

Analysis of Gene Expression and Physiological Responses in Three Mexican Maize Landraces under Drought Stress and Recovery Irrigation

(2009) Corina Hayano-Kanashiro et al.   PLoS One

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

(2009) M. Yassour et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proline: a multifunctional amino acid

(2009) László Szabados et al.   TRENDS IN PLANT SCIENCE

Proline accumulation in plants: a review

(2008) Nathalie Verbruggen et al.   AMINO ACIDS

Stressed genomics—bringing relief to rice fields

(2008) Hei Leung   CURRENT OPINION IN PLANT BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Class III peroxidases in plant defence reactions

(2008) L. Almagro et al.   JOURNAL OF EXPERIMENTAL BOTANY

The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors

(2008) Daiqing Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Abscisic Acid-mediated Epigenetic Processes in Plant Development and Stress Responses

(2008) Viswanathan Chinnusamy et al.   Journal of Integrative Plant Biology

Influence of Water Stress on Endogenous Hormone Contents and Cell Damage of Maize Seedlings

(2008) Chunrong Wang et al.   Journal of Integrative Plant Biology

Trehalose Biosynthesis in Response to Abiotic Stresses

(2008) Mihaela Iordachescu et al.   Journal of Integrative Plant Biology

An Update on Abscisic Acid Signaling in Plants and More …

(2008) Aleksandra Wasilewska et al.   Molecular Plant

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Metabolic regulation of leaf senescence: interactions of sugar signalling with biotic and abiotic stress responses

(2008) A. Wingler et al.   PLANT BIOLOGY

Phosphate Availability Alters Lateral Root Development in Arabidopsis by Modulating Auxin Sensitivity via a Mechanism Involving the TIR1 Auxin Receptor

(2008) C.-A. Perez-Torres et al.   PLANT CELL

The role of cytokinins in responses to water deficit in tobacco plants over-expressing trans-zeatin O-glucosyltransferase gene under 35S or SAG12 promoters

(2008) MARIE HAVLOVÁ et al.   PLANT CELL AND ENVIRONMENT

Metabolomic and proteomic changes in the xylem sap of maize under drought

(2008) SOPHIE ALVAREZ et al.   PLANT CELL AND ENVIRONMENT

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics

(2008) Kaoru Urano et al.   PLANT JOURNAL

Genome-wide targeted prediction of ABA responsive genes in rice based on over-represented cis-motif in co-expressed genes

(2008) Sangram K. Lenka et al.   PLANT MOLECULAR BIOLOGY

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

(2008) Thomas Degenkolbe et al.   PLANT MOLECULAR BIOLOGY

GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

(2008) A. Yilmaz et al.   PLANT PHYSIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA