Identification of volatile and softening-related genes using digital gene expression profiles in melting peach

An integrative “omics” approach identifies new candidate genes to impact aroma volatiles in peach fruit

(2013) Gerardo Sánchez et al.   BMC GENOMICS

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

(2012) Keqin Yu et al.   BMC GENOMICS

Transcriptomic analysis of ‘Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq

(2012) Guoqin Liu et al.   BMC GENOMICS

Down-regulation of POLYGALACTURONASE1 alters firmness, tensile strength and water loss in apple (Malus x domestica) fruit

(2012) Ross G Atkinson et al.   BMC PLANT BIOLOGY

Expression profiling of genes involved in the formation of aroma in two peach genotypes

(2012) R. Pirona et al.   PLANT BIOLOGY

Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps

(2012) Iban Eduardo et al.   Tree Genetics & Genomes

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

(2011) Shaogui Guo et al.   BMC GENOMICS

New approaches to Prunus transcriptome analysis

(2011) Pedro Martínez-Gómez et al.   GENETICA

A comparative study of melting and non-melting flesh peach cultivars reveals that during fruit ripening endo-polygalacturonase (endo-PG) is mainly involved in pericarp textural changes, not in firmness reduction

(2011) A. Ghiani et al.   JOURNAL OF EXPERIMENTAL BOTANY

Postharvest temperature influences volatile lactone production via regulation of acyl-CoA oxidases in peach fruit

(2011) WAN-PENG XI et al.   PLANT CELL AND ENVIRONMENT

Differential transcript abundance and genotypic variation of four putative allergen-encoding gene families in melting peach

(2011) Zhaowei Yang et al.   Tree Genetics & Genomes

Expression of Genes Associated with Aroma Formation Derived from the Fatty Acid Pathway during Peach Fruit Ripening

(2010) Bo Zhang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of key odor volatile compounds in the essential oil of nine peach accessions

(2010) Iban Eduardo et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Saturating the Prunus (stone fruits) genome with candidate genes for fruit quality

(2010) Eudald Illa et al.   MOLECULAR BREEDING

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality

(2009) Paula Vizoso et al.   BMC GENOMICS

Selection of reliable reference genes for gene expression studies in peach using real-time PCR

(2009) Zhaoguo Tong et al.   BMC MOLECULAR BIOLOGY

Volatile characteristics of 50 peaches and nectarines evaluated by HP–SPME with GC–MS

(2009) Yiju Wang et al.   FOOD CHEMISTRY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Biosynthesis of plant-derived flavor compounds

(2008) Wilfried Schwab et al.   PLANT JOURNAL

Cellular expansion and gene expression in the developing grape (Vitis vinifera L.)

(2008) J. Schlosser et al.   PROTOPLASMA

Comparative analysis of expressed sequence tags from tissues in ripening stages of peach (Prunus persica L. Batsch)

(2008) A. Vecchietti et al.   Tree Genetics & Genomes