NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration

Network2Canvas: network visualization on a canvas with enrichment analysis

(2013) Christopher M. Tan et al.   BIOINFORMATICS

INVEX—a web-based tool for integrative visualization of expression data

(2013) Jianguo Xia et al.   BIOINFORMATICS

NeXO Web: the NeXO ontology database and visualization platform

(2013) Janusz Dutkowski et al.   NUCLEIC ACIDS RESEARCH

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies

(2013) Zhenjun Hu et al.   NUCLEIC ACIDS RESEARCH

INMEX—a web-based tool for integrative meta-analysis of expression data

(2013) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Using random walks to identify cancer-associated modules in expression data

(2013) Deanna Petrochilos et al.   BioData Mining

Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web

(2012) Chase A. Miller et al.   BIOINFORMATICS

atBioNet– an integrated network analysis tool for genomics and biomarker discovery

(2012) Yijun Ding et al.   BMC GENOMICS

Rescue of Dysfunctional Autophagy Attenuates Hyperinflammatory Responses from Cystic Fibrosis Cells

(2012) M. L. Mayer et al.   JOURNAL OF IMMUNOLOGY

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

(2012) Sandra Orchard et al.   NATURE METHODS

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation

(2012) Karin Breuer et al.   NUCLEIC ACIDS RESEARCH

MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis

(2012) J. Xia et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2013 update

(2012) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays

(2012) Pascal Braun   PROTEOMICS

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

The Biomolecular Interaction Network Database in PSI-MI 2.5

(2011) Ruth Isserlin et al.   Database-The Journal of Biological Databases and Curation

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto

(2009) Kevin R. Brown et al.   BIOINFORMATICS

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

(2008) J. Reimand et al.   NUCLEIC ACIDS RESEARCH

GEPAS, a web-based tool for microarray data analysis and interpretation

(2008) J. Tarraga et al.   NUCLEIC ACIDS RESEARCH

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

(2008) S. Brohee et al.   NUCLEIC ACIDS RESEARCH