The impact of whole-genome sequencing on the reconstruction of human population history
出版年份 2014 全文链接
标题
The impact of whole-genome sequencing on the reconstruction of human population history
作者
关键词
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出版物
NATURE REVIEWS GENETICS
Volume 15, Issue 3, Pages 149-162
出版商
Springer Nature
发表日期
2014-02-04
DOI
10.1038/nrg3625
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it
- (2013) Joseph Lachance et al. BIOESSAYS
- mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
- (2013) Hákon Jónsson et al. BIOINFORMATICS
- Higher Levels of Neanderthal Ancestry in East Asians than in Europeans
- (2013) Jeffrey D. Wall et al. GENETICS
- Estimating Variable Effective Population Sizes from Multiple Genomes: A Sequentially Markov Conditional Sampling Distribution Approach
- (2013) S. Sheehan et al. GENETICS
- Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping
- (2013) Mathieu Gautier et al. MOLECULAR ECOLOGY
- Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
- (2013) Ludovic Orlando et al. NATURE
- The complete genome sequence of a Neanderthal from the Altai Mountains
- (2013) Kay Prüfer et al. NATURE
- Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
- (2013) Iñaki Comas et al. NATURE GENETICS
- Understanding the origin of species with genome-scale data: modelling gene flow
- (2013) Vitor Sousa et al. NATURE REVIEWS GENETICS
- DNA analysis of an early modern human from Tianyuan Cave, China
- (2013) Q. Fu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene flow from North Africa contributes to differential human genetic diversity in southern Europe
- (2013) L. R. Botigue et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity
- (2013) G. Brandt et al. SCIENCE
- Properties and rates of germline mutations in humans
- (2013) Catarina D. Campbell et al. TRENDS IN GENETICS
- Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans
- (2013) Paul Brotherton et al. Nature Communications
- The Geography of Recent Genetic Ancestry across Europe
- (2013) Peter Ralph et al. PLOS BIOLOGY
- Inferring Demographic History from a Spectrum of Shared Haplotype Lengths
- (2013) Kelley Harris et al. PLoS Genetics
- Length Distributions of Identity by Descent Reveal Fine-Scale Demographic History
- (2012) Pier Francesco Palamara et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Ethiopian Genetic Diversity Reveals Linguistic Stratification and Complex Influences on the Ethiopian Gene Pool
- (2012) Luca Pagani et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers
- (2012) Joseph Lachance et al. CELL
- Ancestry of modern Europeans: contributions of ancient DNA
- (2012) Marie Lacan et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Genomic Affinities of Two 7,000-Year-Old Iberian Hunter-Gatherers
- (2012) Federico Sánchez-Quinto et al. CURRENT BIOLOGY
- Population Genetics Models of Local Ancestry
- (2012) S. Gravel GENETICS
- Rates and Fitness Consequences of New Mutations in Humans
- (2012) Peter D. Keightley GENETICS
- Ancient Admixture in Human History
- (2012) N. Patterson et al. GENETICS
- Ancient Structure in Africa Unlikely to Explain Neanderthal and Non-African Genetic Similarity
- (2012) M. A. Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Global Genetic Variation at OAS1 Provides Evidence of Archaic Admixture in Melanesian Populations
- (2012) F. L. Mendez et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reconstructing Native American population history
- (2012) David Reich et al. NATURE
- A map of rice genome variation reveals the origin of cultivated rice
- (2012) Xuehui Huang et al. NATURE
- Analyses of pig genomes provide insight into porcine demography and evolution
- (2012) Martien A. M. Groenen et al. NATURE
- Rate of de novo mutations and the importance of father’s age to disease risk
- (2012) Augustine Kong et al. NATURE
- DNA sequencing with nanopores
- (2012) Grégory F Schneider et al. NATURE BIOTECHNOLOGY
- Revising the human mutation rate: implications for understanding human evolution
- (2012) Aylwyn Scally et al. NATURE REVIEWS GENETICS
- Ancient DNA from Hunter-Gatherer and Farmer Groups from Northern Spain Supports a Random Dispersion Model for the Neolithic Expansion into Europe
- (2012) Montserrat Hervella et al. PLoS One
- SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
- (2012) Rasmus Nielsen et al. PLoS One
- Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
- (2012) Adam C. English et al. PLoS One
- Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins
- (2012) A. Eriksson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion
- (2012) S. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History
- (2012) C. M. Schlebusch et al. SCIENCE
- Human Evolution Out of Africa: The Role of Refugia and Climate Change
- (2012) J. R. Stewart et al. SCIENCE
- Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe
- (2012) P. Skoglund et al. SCIENCE
- An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People
- (2012) M. R. Nelson et al. SCIENCE
- The genetic history of Europeans
- (2012) Ron Pinhasi et al. TRENDS IN GENETICS
- The genetic prehistory of southern Africa
- (2012) Joseph K. Pickrell et al. Nature Communications
- New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
- (2012) Andreas Keller et al. Nature Communications
- Genomic Data Reveal a Complex Making of Humans
- (2012) Isabel Alves et al. PLoS Genetics
- The Date of Interbreeding between Neandertals and Modern Humans
- (2012) Sriram Sankararaman et al. PLoS Genetics
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species
- (2012) Thomas Mailund et al. PLoS Genetics
- Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania
- (2011) David Reich et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Ancient DNA perspectives on American colonization and population history
- (2011) Jennifer A. Raff et al. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY
- Ancient human DNA
- (2011) Karola Kirsanow et al. ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER
- Perspectives on Human Population Structure at the Cusp of the Sequencing Era
- (2011) John Novembre et al. Annual Review of Genomics and Human Genetics
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Genetic variation in the Sorbs of eastern Germany in the context of broader European genetic diversity
- (2011) Krishna R Veeramah et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- Inference of Site Frequency Spectra From High-Throughput Sequence Data: Quantification of Selection on Nonsynonymous and Synonymous Sites in Humans
- (2011) Peter D. Keightley et al. GENETICS
- A reduced representation approach to population genetic analyses and applications to human evolution
- (2011) F. Luca et al. GENOME RESEARCH
- An Early Divergence of KhoeSan Ancestors from Those of Other Modern Humans Is Supported by an ABC-Based Analysis of Autosomal Resequencing Data
- (2011) Krishna R. Veeramah et al. MOLECULAR BIOLOGY AND EVOLUTION
- Testing for Ancient Admixture between Closely Related Populations
- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- The earliest evidence for anatomically modern humans in northwestern Europe
- (2011) Tom Higham et al. NATURE
- Early dispersal of modern humans in Europe and implications for Neanderthal behaviour
- (2011) Stefano Benazzi et al. NATURE
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- Bayesian inference of ancient human demography from individual genome sequences
- (2011) Ilan Gronau et al. NATURE GENETICS
- Variation in genome-wide mutation rates within and between human families
- (2011) Donald F Conrad et al. NATURE GENETICS
- Haplotype phasing: existing methods and new developments
- (2011) Sharon R. Browning et al. NATURE REVIEWS GENETICS
- Learning about human population history from ancient and modern genomes
- (2011) Mark Stoneking et al. NATURE REVIEWS GENETICS
- The Later Stone Age Calvaria from Iwo Eleru, Nigeria: Morphology and Chronology
- (2011) Katerina Harvati et al. PLoS One
- Archaic human ancestry in East Asia
- (2011) P. Skoglund et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic evidence for archaic admixture in Africa
- (2011) M. F. Hammer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ancient DNA reveals male diffusion through the Neolithic Mediterranean route
- (2011) M. Lacan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hunter-gatherer genomic diversity suggests a southern African origin for modern humans
- (2011) B. M. Henn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Demographic history and rare allele sharing among human populations
- (2011) S. Gravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia
- (2011) M. Rasmussen et al. SCIENCE
- Direct Measure of the De Novo Mutation Rate in Autism and Schizophrenia Cohorts
- (2010) Philip Awadalla et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Demographic History of Oceania Inferred from Genome-wide Data
- (2010) Andreas Wollstein et al. CURRENT BIOLOGY
- Archaeogenetics — Towards a ‘New Synthesis’?
- (2010) Colin Renfrew CURRENT BIOLOGY
- The Human Genetic History of the Americas: The Final Frontier
- (2010) Dennis H. O'Rourke et al. CURRENT BIOLOGY
- The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
- (2010) Andreas Futschik et al. GENETICS
- Population genetic inference from genomic sequence variation
- (2010) J. E. Pool et al. GENOME RESEARCH
- Host-Interactive Genes in Amerindian Helicobacter pylori Diverge from Their Old World Homologs and Mediate Inflammatory Responses
- (2010) S. P. Mane et al. JOURNAL OF BACTERIOLOGY
- In defence of model-based inference in phylogeography
- (2010) MARK A. BEAUMONT et al. MOLECULAR ECOLOGY
- Coalescent-based, maximum likelihood inference in phylogeography
- (2010) ALAN R. TEMPLETON MOLECULAR ECOLOGY
- Complete Khoisan and Bantu genomes from southern Africa
- (2010) Stephan C. Schuster et al. NATURE
- The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
- (2010) Johannes Krause et al. NATURE
- Genetic history of an archaic hominin group from Denisova Cave in Siberia
- (2010) David Reich et al. NATURE
- Ancient human genome sequence of an extinct Palaeo-Eskimo
- (2010) Morten Rasmussen et al. NATURE
- Haplotype-resolved genome sequencing of a Gujarati Indian individual
- (2010) Jacob O Kitzman et al. NATURE BIOTECHNOLOGY
- Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products
- (2010) Tomislav Maricic et al. PLoS One
- Rate, molecular spectrum, and consequences of human mutation
- (2010) M. Lynch PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Autosomal and X-linked single nucleotide polymorphisms reveal a steep Asian-Melanesian ancestry cline in eastern Indonesia and a sex bias in admixture rates
- (2010) M. P. Cox et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
- (2010) J. C. Roach et al. SCIENCE
- A Draft Sequence of the Neandertal Genome
- (2010) R. E. Green et al. SCIENCE
- Ancient DNA from European Early Neolithic Farmers Reveals Their Near Eastern Affinities
- (2010) Wolfgang Haak et al. PLOS BIOLOGY
- A Predominantly Neolithic Origin for European Paternal Lineages
- (2010) Patricia Balaresque et al. PLOS BIOLOGY
- Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives
- (2010) Michael Knapp et al. Genes
- Ancient DNA Reveals Lack of Continuity between Neolithic Hunter-Gatherers and Contemporary Scandinavians
- (2009) Helena Malmström et al. CURRENT BIOLOGY
- Estimation of Allele Frequencies From High-Coverage Genome-Sequencing Projects
- (2009) M. Lynch GENETICS
- Global distribution of genomic diversity underscores rich complex history of continental human populations
- (2009) A. Auton et al. GENOME RESEARCH
- A Statistical Evaluation of Models for the Initial Settlement of the American Continent Emphasizes the Importance of Gene Flow with Asia
- (2009) N. Ray et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Worldwide Survey of Human Male Demographic History Based on Y-SNP and Y-STR Data from the HGDP-CEPH Populations
- (2009) W. Shi et al. MOLECULAR BIOLOGY AND EVOLUTION
- Detecting Ancient Admixture and Estimating Demographic Parameters in Multiple Human Populations
- (2009) Jeffrey D. Wall et al. MOLECULAR BIOLOGY AND EVOLUTION
- Statistical inferences in phylogeography
- (2009) RASMUS NIELSEN et al. MOLECULAR ECOLOGY
- Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
- (2009) Adrian W. Briggs et al. NUCLEIC ACIDS RESEARCH
- Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa
- (2009) M. DeGiorgio et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Middle and later Pleistocene hominins in Africa and Southwest Asia
- (2009) G. P. Rightmire PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic Discontinuity Between Local Hunter-Gatherers and Central Europe's First Farmers
- (2009) B. Bramanti et al. SCIENCE
- The Genetic Structure and History of Africans and African Americans
- (2009) S. A. Tishkoff et al. SCIENCE
- Mitochondrial Population Genomics Supports a Single Pre-Clovis Origin with a Coastal Route for the Peopling of the Americas
- (2008) Nelson J.R. Fagundes et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Population Genetic Inference From Resequencing Data
- (2008) R. Jiang et al. GENETICS
- A novel DNA sequence database for analyzing human demographic history
- (2008) J. D. Wall et al. GENOME RESEARCH
- Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
- (2008) I. Hellmann et al. GENOME RESEARCH
- The Effect of Ancient DNA Damage on Inferences of Demographic Histories
- (2008) E. Axelsson et al. MOLECULAR BIOLOGY AND EVOLUTION
- Estimation of Nucleotide Diversity, Disequilibrium Coefficients, and Mutation Rates from High-Coverage Genome-Sequencing Projects
- (2008) M. Lynch MOLECULAR BIOLOGY AND EVOLUTION
- Accommodating the Effect of Ancient DNA Damage on Inferences of Demographic Histories
- (2008) A. Rambaut et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genes mirror geography within Europe
- (2008) John Novembre et al. NATURE
- Genotype, haplotype and copy-number variation in worldwide human populations
- (2008) Mattias Jakobsson et al. NATURE
- Interpreting principal component analyses of spatial population genetic variation
- (2008) John Novembre et al. NATURE GENETICS
- Updated Three-Stage Model for the Peopling of the Americas
- (2008) Connie J. Mulligan et al. PLoS One
- DNA from Pre-Clovis Human Coprolites in Oregon, North America
- (2008) M. T. P. Gilbert et al. SCIENCE
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