Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives

Analysis of ancient human genomes

(2010) Beth Shapiro et al.   BIOESSAYS

A Complete mtDNA Genome of an Early Modern Human from Kostenki, Russia

(2010) Johannes Krause et al.   CURRENT BIOLOGY

The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

(2010) Johannes Krause et al.   NATURE

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

A Complete Mitochondrial Genome Sequence from a Mesolithic Wild Aurochs (Bos primigenius)

(2010) Ceiridwen J. Edwards et al.   PLoS One

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

(2010) C. Lindqvist et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

(2010) H. A. Burbano et al.   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Computational challenges in the analysis of ancient DNA

(2010) Kay Prüfer et al.   GENOME BIOLOGY

Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data

(2009) Morten E. Allentoft et al.   BIOTECHNIQUES

Optimization of 454 sequencing library preparation from small amounts of DNA permits sequence determination of both DNA strands

(2009) Tomislav Maricic et al.   BIOTECHNIQUES

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

(2009) Johannes Krause et al.   BMC EVOLUTIONARY BIOLOGY

The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

(2009) W. Miller et al.   GENOME RESEARCH

Tracking the past: Interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius

(2009) F. Zhao et al.   GENOME RESEARCH

Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA

(2009) M. Stiller et al.   GENOME RESEARCH

Ancient mitogenomics

(2009) Simon Y.W. Ho et al.   MITOCHONDRION

Targeted capture and massively parallel sequencing of 12 human exomes

(2009) Sarah B. Ng et al.   NATURE

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing

(2009) Emily Hodges et al.   Nature Protocols

Paleogenomics in a Temperate Environment: Shotgun Sequencing from an Extinct Mediterranean Caprine

(2009) Oscar Ramírez et al.   PLoS One

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

Primer Extension Capture: Targeted Sequence Retrieval from Heavily Degraded DNA Sources

(2009) Adrian W. Briggs et al.   Jove-Journal of Visualized Experiments

A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing

(2008) Richard E. Green et al.   CELL

Sequencing the nuclear genome of the extinct woolly mammoth

(2008) Webb Miller et al.   NATURE

Parallel tagged sequencing on the 454 platform

(2008) Matthias Meyer et al.   Nature Protocols

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

(2008) M. T. P. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts"

(2008) R. Debruyne et al.   SCIENCE

Paleo-Eskimo mtDNA Genome Reveals Matrilineal Discontinuity in Greenland

(2008) M. T. P. Gilbert et al.   SCIENCE

New developments in ancient genomics

(2008) Craig D. Millar et al.   TRENDS IN ECOLOGY & EVOLUTION

Fishing for ancient DNA

(2007) Cecilia Anderung et al.   Forensic Science International-Genetics