Proteomics in evolutionary ecology: linking the genotype with the phenotype

Predicted Effector Molecules in the Salivary Secretome of the Pea Aphid (Acyrthosiphon pisum): A Dual Transcriptomic/Proteomic Approach

(2011) James C. Carolan et al.   JOURNAL OF PROTEOME RESEARCH

Snake population venomics and antivenomics of Bothrops atrox: Paedomorphism along its transamazonian dispersal and implications of geographic venom variability on snakebite management

(2011) Juan J. Calvete et al.   Journal of Proteomics

Multiple Hypothesis Testing in Proteomics: A Strategy for Experimental Work

(2011) Angel P. Diz et al.   MOLECULAR & CELLULAR PROTEOMICS

Stored sperm differs from ejaculated sperm by proteome alterations associated with energy metabolism in the honeybee Apis mellifera

(2011) VERONICA POLAND et al.   MOLECULAR ECOLOGY

Non-adaptive origins of interactome complexity

(2011) Ariel Fernández et al.   NATURE

Pull-down for single molecules

(2011) Philip Tinnefeld   NATURE

Evidence of altered RNA stirs debate

(2011) Erika Check Hayden   NATURE

Royalactin induces queen differentiation in honeybees

(2011) Masaki Kamakura   NATURE

Initial impact of the sequencing of the human genome

(2011) Eric S. Lander   NATURE

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Beyond DNA: integrating inclusive inheritance into an extended theory of evolution

(2011) Étienne Danchin et al.   NATURE REVIEWS GENETICS

Silencing of Soybean Seed Storage Proteins Results in a Rebalanced Protein Composition Preserving Seed Protein Content without Major Collateral Changes in the Metabolome and Transcriptome

(2011) M. A. Schmidt et al.   PLANT PHYSIOLOGY

The Lives of Proteins

(2011) J. B. Plotkin   SCIENCE

Waiting for the Revolution

(2011) E. Marshall   SCIENCE

Proteome Half-Life Dynamics in Living Human Cells

(2011) E. Eden et al.   SCIENCE

Genomics Is Not Enough

(2011) A. Chakravarti   SCIENCE

Widespread RNA and DNA Sequence Differences in the Human Transcriptome

(2011) M. Li et al.   SCIENCE

Beyond Missing Heritability: Prediction of Complex Traits

(2011) Robert Makowsky et al.   PLoS Genetics

Environmental Proteomics: Changes in the Proteome of Marine Organisms in Response to Environmental Stress, Pollutants, Infection, Symbiosis, and Development

(2010) Lars Tomanek   Annual Review of Marine Science

The role of phenotypic plasticity on the proteome differences between two sympatric marine snail ecotypes adapted to distinct micro-habitats

(2010) Mónica Martínez-Fernández et al.   BMC EVOLUTIONARY BIOLOGY

Insights into the role of differential gene expression on the ecological adaptation of the snail Littorina saxatilis

(2010) Mónica Martínez-Fernández et al.   BMC EVOLUTIONARY BIOLOGY

Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon

(2010) Claudia Voelckel et al.   BMC EVOLUTIONARY BIOLOGY

Applying QTL analysis to conservation genetics

(2010) François Besnier et al.   CONSERVATION GENETICS

A guide to the genomics of ecological speciation in natural animal populations

(2010) Amber M. Rice et al.   ECOLOGY LETTERS

From 2-D electrophoresis to proteomics

(2010) Joachim Klose   ELECTROPHORESIS

The proteome of lentil (Lens culinaris Medik.) seeds: Discriminating between landraces

(2010) Gabriella Stefania Scippa et al.   ELECTROPHORESIS

Review of recent proteomic applications in aquatic toxicology

(2010) Brian C. Sanchez et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Mass spectrometry–based proteomics in cell biology

(2010) Tobias C. Walther et al.   JOURNAL OF CELL BIOLOGY

Preservation of Field Samples for Enzymatic and Proteomic Characterization: Analysis of Proteins from the Trophallactic Fluid of Hornets and Yellowjackets

(2010) Violet A. Roskens et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Extracellular Matrix Proteins of Rice (Oryza sativaL.) Involved in Dehydration-Responsive Network: A Proteomic Approach

(2010) Aarti Pandey et al.   JOURNAL OF PROTEOME RESEARCH

Snake Venomics ofBothriechis nigroviridisReveals Extreme Variability among Palm Pitviper Venoms: Different Evolutionary Solutions for the Same Trophic Purpose

(2010) Julián Fernández et al.   JOURNAL OF PROTEOME RESEARCH

Insight into the Sialome of the Bed Bug,Cimex lectularius

(2010) Ivo M. B. Francischetti et al.   JOURNAL OF PROTEOME RESEARCH

Snake venomics and antivenomics of Crotalus durissus subspecies from Brazil: Assessment of geographic variation and its implication on snakebite management

(2010) Johara Boldrini-França et al.   Journal of Proteomics

Two-dimensional gel electrophoresis in proteomics: Past, present and future

(2010) Thierry Rabilloud et al.   Journal of Proteomics

Identification of Quantitative Trait Loci Underlying Proteome Variation in Human Lymphoblastoid Cells

(2010) Nikhil Garge et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level

(2010) Jannie M. R. Danielsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Comparative Proteomics Uncovers the Signature of Natural Selection Acting on the Ejaculate Proteomes of Two Cricket Species Isolated by Postmating, Prezygotic Phenotypes

(2010) Jeremy L. Marshall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Combined EST and Proteomic Analysis Identifies Rapidly Evolving Seminal Fluid Proteins in Heliconius Butterflies

(2010) J. R. Walters et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population Proteomics: Quantitative Variation Within and Among Populations in Cardiac Protein Expression

(2010) B. B. Rees et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sperm Proteomics Reveals Intensified Selection on Mouse Sperm Membrane and Acrosome Genes

(2010) Steve Dorus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)

(2010) BRENT L. LOCKWOOD et al.   MOLECULAR ECOLOGY

Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

(2010) JOCHEN B. W. WOLF et al.   MOLECULAR ECOLOGY

Interactome under construction

(2010) Laura Bonetta   NATURE

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Differential Gene Expression and Protein Abundance Evince Ontogenetic Bias toward Castes in a Primitively Eusocial Wasp

(2010) James H. Hunt et al.   PLoS One

Ecological Adaptation of Diverse Honey Bee (Apis mellifera) Populations

(2010) Robert Parker et al.   PLoS One

Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina

(2010) Hao Wang et al.   PROTEOMICS

Protein abundances are more conserved than mRNA abundances across diverse taxa

(2010) Jon M. Laurent et al.   PROTEOMICS

Global analysis of the rat and human platelet proteome - the molecular blueprint for illustrating multi-functional platelets and cross-species function evolution

(2010) Yanbao Yu et al.   PROTEOMICS

Molecular diversity of toxic components from the scorpion Heterometrus petersii venom revealed by proteomic and transcriptome analysis

(2010) Yibao Ma et al.   PROTEOMICS

Gel-based and gel-free proteomic analysis of Nicotiana tabacum trichomes identifies proteins involved in secondary metabolism and in the (a)biotic stress response

(2010) Emmanuel Van Cutsem et al.   PROTEOMICS

Phenotypic plasticity's impacts on diversification and speciation

(2010) David W. Pfennig et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

(2010) P. Wilmes et al.   mBio

Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

(2009) John R. Yates et al.   Annual Review of Biomedical Engineering

Proteomics enhances evolutionary and functional analysis of reproductive proteins

(2009) Geoffrey D. Findlay et al.   BIOESSAYS

A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests

(2009) Antonio Carvajal-Rodríguez et al.   BMC BIOINFORMATICS

Proteomic identification of differentially expressed and phosphorylated proteins in epidermis involved in larval-pupal metamorphosis of Helicoverpa armigera

(2009) Qiang Fu et al.   BMC GENOMICS

Toward defining the phosphoproteome ofXenopus laevisembryos

(2009) Jered V. McGivern et al.   DEVELOPMENTAL DYNAMICS

The consequences of sample pooling in proteomics: An empirical study

(2009) Angel P. Diz et al.   ELECTROPHORESIS

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila

(2009) G. D. Findlay et al.   GENOME RESEARCH

Proteomic analysis of Drosophila mojavensis male accessory glands suggests novel classes of seminal fluid proteins

(2009) Erin S. Kelleher et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

An insight into the transcriptome and proteome of the salivary gland of the stable fly, Stomoxys calcitrans

(2009) Xuyong Wang et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The proteome of a wine yeast strain during fermentation, correlation with the transcriptome

(2009) T. Rossignol et al.   JOURNAL OF APPLIED MICROBIOLOGY

Snake Population Venomics: Proteomics-Based Analyses of Individual Variation Reveals Significant Gene Regulation Effects on Venom Protein Expression in Sistrurus Rattlesnakes

(2009) H. Lisle Gibbs et al.   JOURNAL OF MOLECULAR EVOLUTION

2D Gel-Based Proteome and Phosphoproteome Analysis During Larval Metamorphosis in Two Major Marine Biofouling Invertebrates

(2009) Vengatesen Thiyagarajan et al.   JOURNAL OF PROTEOME RESEARCH

Snake Venomics of the Central American RattlesnakeCrotalus simusand the South AmericanCrotalus durissusComplex Points to Neurotoxicity as an Adaptive Paedomorphic Trend alongCrotalusDispersal in South America

(2009) Juan J. Calvete et al.   JOURNAL OF PROTEOME RESEARCH

Snake venomics and antivenomics of Bothrops atrox venoms from Colombia and the Amazon regions of Brazil, Perú and Ecuador suggest the occurrence of geographic variation of venom phenotype by a trend towards paedomorphism

(2009) Vitelbina Núñez et al.   Journal of Proteomics

Quantitative Proteomics by Metabolic Labeling of Model Organisms

(2009) Joost W. Gouw et al.   MOLECULAR & CELLULAR PROTEOMICS

ZP Domain Proteins in the Abalone Egg Coat Include a Paralog of VERL under Positive Selection That Binds Lysin and 18-kDa Sperm Proteins

(2009) J. E. Aagaard et al.   MOLECULAR BIOLOGY AND EVOLUTION

Proteomics and Comparative Genomic Investigations Reveal Heterogeneity in Evolutionary Rate of Male Reproductive Proteins in Mice (Mus domesticus)

(2009) M. D. Dean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcription, Translation, and the Evolution of Specialists and Generalists

(2009) S. Zhong et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extreme changes to gene expression associated with homoploid hybrid speciation

(2009) MATTHEW J. HEGARTY et al.   MOLECULAR ECOLOGY

Proteomic and phenotypic profiling of the amphibian pathogenBatrachochytrium dendrobatidisshows that genotype is linked to virulence

(2009) MATTHEW C. FISHER et al.   MOLECULAR ECOLOGY

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

(2009) Matthias Gstaiger et al.   NATURE REVIEWS GENETICS

Adaptive radiations: From field to genomic studies

(2009) S. A. Hodges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic characterization ofPhragmites communisin ecotypes of swamp and desert dune

(2009) Suxia Cui et al.   PROTEOMICS

Proteomic analysis of mitochondria fromCaenorhabditis elegans

(2009) Jing Li et al.   PROTEOMICS

Helicobacter pyloriproteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining

(2009) Peter R. Jungblut et al.   PROTEOMICS

Fish proteome analysis: Model organisms and non-sequenced species

(2009) Ignasi Forné et al.   PROTEOMICS

Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes

(2009) Sabine P Schrimpf et al.   PLOS BIOLOGY

Multidimensional LC Separations in Shotgun Proteomics

(2008) Akira Motoyama et al.   ANALYTICAL CHEMISTRY

Discrepancy between mRNA and protein abundance: Insight from information retrieval process in computers

(2008) Degeng Wang   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Protein–protein interactions: from global to local analyses

(2008) WP Kelly et al.   CURRENT OPINION IN BIOTECHNOLOGY

Proteome analysis of snake venom toxins: pharmacological insights

(2008) Dessislava Georgieva et al.   Expert Review of Proteomics

The use of genomics, proteomics and other OMICS technologies for the global understanding of biomining microorganisms

(2008) Carlos A. Jerez   HYDROMETALLURGY

Proteomic Comparison between Two Marine Snail Ecotypes Reveals Details about the Biochemistry of Adaptation

(2008) Mónica Martínez-Fernández et al.   JOURNAL OF PROTEOME RESEARCH

Snake Venomics of the Lancehead PitviperBothrops asper: Geographic, Individual, and Ontogenetic Variations

(2008) Alberto Alape-Girón et al.   JOURNAL OF PROTEOME RESEARCH

Snake Venomics of the Lesser Antillean Pit VipersBothrops caribbaeusandBothrops lanceolatus: Correlation with Toxicological Activities and Immunoreactivity of a Heterologous Antivenom†

(2008) José María Gutiérrez et al.   JOURNAL OF PROTEOME RESEARCH

Advances in the Analysis of Protein Phosphorylation

(2008) Alberto Paradela et al.   JOURNAL OF PROTEOME RESEARCH

Protein identification pipeline for the homology-driven proteomics

(2008) Magno Junqueira et al.   Journal of Proteomics

Genetic Variation Underlying Protein Expression in Eggs of the Marine MusselMytilus edulis

(2008) Angel P. Diz et al.   MOLECULAR & CELLULAR PROTEOMICS

Comparative Proteomics Reveals Evidence for Evolutionary Diversification of Rodent Seminal Fluid and Its Functional Significance in Sperm Competition

(2008) S. A. Ramm et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

A Differential Proteomic Approach Reveals an Evolutionary Conserved Regulation of Nme Proteins by Fe65 in C. elegans and Mouse

(2008) Francesco Napolitano et al.   NEUROCHEMICAL RESEARCH

Cell-free protein synthesis: applications in proteomics and biotechnology

(2008) Mingyue He   New Biotechnology

Detection of seminal fluid proteins in the bed bug, Cimex lectularius, using two-dimensional gel electrophoresis and mass spectrometry

(2008) K. REINHARDT et al.   PARASITOLOGY

Proteomic analysis of the response to high-salinity stress in Physcomitrella patens

(2008) Xiaoqin Wang et al.   PLANTA

Precision proteomics: The case for high resolution and high mass accuracy

(2008) M. Mann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Searching for candidate speciation genes using a proteomic approach: seminal proteins in field crickets

(2008) J. A Andres et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines

(2008) Weiwei Wang et al.   PROTEOMICS

Population proteomics: Investigation of protein diversity in human populations

(2008) Dobrin Nedelkov   PROTEOMICS

Proteomic analysis of the venom from the fish eating coral snakeMicrurus surinamensis: Novel toxins, their function and phylogeny

(2008) Timoteo Olamendi-Portugal et al.   PROTEOMICS

An approach to handling and interpretation of ambiguous data in transcriptome and proteome comparisons

(2008) Martin Irmler et al.   PROTEOMICS

Difference gel electrophoresis

(2008) John F. Timms et al.   PROTEOMICS

Exploring snake venom proteomes: multifaceted analyses for complex toxin mixtures

(2008) Jay W. Fox et al.   PROTEOMICS

Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating

(2008) Geoffrey D Findlay et al.   PLOS BIOLOGY

A Genome-Wide Association Study Identifies Protein Quantitative Trait Loci (pQTLs)

(2008) David Melzer et al.   PLoS Genetics

Snake Venomics of Central American Pitvipers: Clues for Rationalizing the Distinct Envenomation Profiles of Atropoides nummifer and Atropoides picadoi

(2007) Yamileth Angulo et al.   JOURNAL OF PROTEOME RESEARCH

Snake venomics of the South and Central American Bushmasters. Comparison of the toxin composition of Lachesis muta gathered from proteomic versus transcriptomic analysis

(2007) Libia Sanz et al.   Journal of Proteomics

Molecular determinants of compatibility polymorphism in the Biomphalaria glabrata/Schistosoma mansoni model: New candidates identified by a global comparative proteomics approach

(2007) Emmanuel Roger et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY