Functional genomics of lactic acid bacteria: from food to health

Microbiota diversity and gene expression dynamics in human oral biofilms

(2014) Alfonso Benítez-Páez et al.   BMC GENOMICS

Comparative Functional Genomics of Lactobacillus spp. Reveals Possible Mechanisms for Specialization of Vaginal Lactobacilli to Their Environment

(2014) H. Mendes-Soares et al.   JOURNAL OF BACTERIOLOGY

Comparative Genome Analysis of Lactobacillus rhamnosus Clinical Isolates from Initial Stages of Dental Pulp Infection: Identification of a New Exopolysaccharide Cluster

(2014) Mangala A. Nadkarni et al.   PLoS One

Development of quantitative PCR and metagenomics-based approaches for strain quantification of a defined mixed-strain starter culture

(2014) Pernille Johansen et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Probiotics, prebiotics, and the host microbiome: the science of translation

(2013) Bryon Petschow et al.   Annals of the New York Academy of Sciences

The Highly Autoaggregative and Adhesive Phenotype of the Vaginal Lactobacillus plantarum Strain CMPG5300 Is Sortase Dependent

(2013) Shweta Malik et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Genomic and Functional Analysis of Lactobacillus casei and Lactobacillus rhamnosus Strains Marketed as Probiotics

(2013) François P. Douillard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genotypic adaptations associated with prolonged persistence ofLactobacillus plantarumin the murine digestive tract

(2013) Hermien van Bokhorst-van de Veen et al.   Biotechnology Journal

Lactobacillusspecies isolated from vaginal secretions of healthy and bacterial vaginosis-intermediate Mexican women: a prospective study

(2013) Marcos Daniel Martínez-Peña et al.   BMC INFECTIOUS DISEASES

Identification and characterisation of vaginal lactobacilli from South African women

(2013) Sonal Pendharkar et al.   BMC INFECTIOUS DISEASES

Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods

(2013) Jumamurat R Bayjanov et al.   BMC MICROBIOLOGY

Genomic transition of enterococci from gut commensals to leading causes of multidrug-resistant hospital infection in the antibiotic era

(2013) Michael S Gilmore et al.   CURRENT OPINION IN MICROBIOLOGY

Diversity of human small intestinalStreptococcusandVeillonellapopulations

(2013) Bartholomeus van den Bogert et al.   FEMS MICROBIOLOGY ECOLOGY

First mass spectrometry metabolic fingerprinting of bacterial metabolism in a model cheese

(2013) C. Le Boucher et al.   FOOD CHEMISTRY

Intersection of the stringent response and the CodY regulon in low GC Gram-positive bacteria

(2013) Tobias Geiger et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Multifactorial diversity sustains microbial community stability

(2013) Oylum Erkus et al.   ISME Journal

Library Screen Identifies Enterococcus faecalis CcpA, the Catabolite Control Protein A, as an Effector of Ace, a Collagen Adhesion Protein Linked to Virulence

(2013) P. Gao et al.   JOURNAL OF BACTERIOLOGY

Unraveling the microbiota of teat apices of clinically healthy lactating dairy cows, with special emphasis on coagulase-negative staphylococci

(2013) G. Braem et al.   JOURNAL OF DAIRY SCIENCE

Effects of Probiotics on the Recurrence of Bacterial Vaginosis

(2013) Aziz Homayouni et al.   Journal of Lower Genital Tract Disease

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM

(2013) B. Johnson et al.   MICROBIOLOGY-SGM

Surface Proteome Analysis of a Natural Isolate ofLactococcus lactisReveals the Presence of Pili Able to Bind Human Intestinal Epithelial Cells

(2013) Mickael Meyrand et al.   MOLECULAR & CELLULAR PROTEOMICS

A functional glycogen biosynthesis pathway inLactobacillus acidophilus: expression and analysis of theglgoperon

(2013) Yong Jun Goh et al.   MOLECULAR MICROBIOLOGY

A gut prediction

(2013) Willem M. de Vos et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Translating the human microbiome

(2013) James Brown et al.   NATURE BIOTECHNOLOGY

Subdural Empyema Due to Lactococcus lactis cremoris: Case Report

(2013) Mizuho INOUE et al.   NEUROLOGIA MEDICO-CHIRURGICA

The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk

(2013) Anne de Jong et al.   PLoS One

Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women

(2013) Tiina Drell et al.   PLoS One

Composition of the Vaginal Microbiota in Women of Reproductive Age – Sensitive and Specific Molecular Diagnosis of Bacterial Vaginosis Is Possible?

(2013) Elena Shipitsyna et al.   PLoS One

Metabolic and Transcriptional Analysis of Acid Stress in Lactococcus lactis, with a Focus on the Kinetics of Lactic Acid Pools

(2013) Ana Lúcia Carvalho et al.   PLoS One

Genomic Adaptation of the Lactobacillus casei Group

(2013) Hidehiro Toh et al.   PLoS One

Vaginal pH and Microbicidal Lactic Acid When Lactobacilli Dominate the Microbiota

(2013) Deirdre E. O’Hanlon et al.   PLoS One

Global Transcriptome Analysis of Lactococcus garvieae Strains in Response to Temperature

(2013) Mónica Aguado-Urda et al.   PLoS One

Availability of public goods shapes the evolution of competing metabolic strategies

(2013) H. Bachmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of Lactococcus lactis isolates from bovine mastitis

(2013) Carme Plumed-Ferrer et al.   VETERINARY MICROBIOLOGY

Molecular Characterization of Host-Specific Biofilm Formation in a Vertebrate Gut Symbiont

(2013) Steven A. Frese et al.   PLoS Genetics

Comparative Genomic and Functional Analysis of 100 Lactobacillus rhamnosus Strains and Their Comparison with Strain GG

(2013) François P. Douillard et al.   PLoS Genetics

Differences in Vaginal Lactobacilli Composition of Iranian Healthy and Bacterial Vaginosis Infected Women: A Comparative Analysis of Their Cytotoxic Effects with Commercial Vaginal Probiotics

(2013) Elahe Motevaseli et al.   Iranian Red Crescent Medical Journal

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis

(2013) Jean M Macklaim et al.   Microbiome

Comparative genome analysis ofLactobacillus caseistrains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin

(2013) François P. Douillard et al.   Microbial Biotechnology

Significance of Heme-Based Respiration in Meat Spoilage Caused by Leuconostoc gasicomitatum

(2012) Elina Jääskeläinen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Abrupt Temporal Fluctuations in the Chicken Fecal Microbiota Are Explained by Its Gastrointestinal Origin

(2012) M. Sekelja et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation

(2012) Jeff R Broadbent et al.   BMC GENOMICS

Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli

(2012) Tom Kormelink et al.   BMC GENOMICS

CodY-mediated regulation of Streptococcus pyogenes exoproteins

(2012) Emily J McDowell et al.   BMC MICROBIOLOGY

Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes

(2012) Xiang Qin et al.   BMC MICROBIOLOGY

Towards metagenome-scale models for industrial applications—the case of Lactic Acid Bacteria

(2012) Filipe Branco dos Santos et al.   CURRENT OPINION IN BIOTECHNOLOGY

Bacterial pericarditis caused by Lactobacillus iners in an infant

(2012) Kenji Murata et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Lactobacillus rhamnosus bacteremia: an emerging clinical entity

(2012) F. Gouriet et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

CcpA forms complexes with CodY and RpoA in Bacillus subtilis

(2012) Andrea Wünsche et al.   FEBS Journal

Monitoring of the microbial communities involved in the soy sauce manufacturing process by PCR-denaturing gradient gel electrophoresis

(2012) Yasushi Tanaka et al.   FOOD MICROBIOLOGY

The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

(2012) Erwin G Zoetendal et al.   ISME Journal

Complete Genome Sequence of Leuconostoc gelidum Strain JB7, Isolated from Kimchi

(2012) Ji Young Jung et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Leuconostoc carnosum Strain JB16, Isolated from Kimchi

(2012) Ji Young Jung et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of the Beer Spoilage Organism Pediococcus claussenii ATCC BAA-344T

(2012) V. Pittet et al.   JOURNAL OF BACTERIOLOGY

CcpA and three newly identified proteins are involved in biofilm development inLactobacillus plantarum

(2012) Lidia Muscariello et al.   JOURNAL OF BASIC MICROBIOLOGY

Transcriptional response of Lactobacillus acidophilus L-92 after attachment to epithelial Caco-2 cells

(2012) Sae Yanagihara et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Selection of Dominant NSLAB from a Mature Traditional Cheese According to their Technological Properties and in vitro Intestinal Challenges

(2012) Zacharias Papanikolaou et al.   JOURNAL OF FOOD SCIENCE

Effect of inactivation of ccpA and aerobic growth in Lactobacillus plantarum: A proteomic perspective

(2012) Maria F. Mazzeo et al.   Journal of Proteomics

Proteomic and transcriptomic analysis of the response to bile stress of Lactobacillus casei BL23

(2012) C. Alcantara et al.   MICROBIOLOGY-SGM

Genome-wide transcriptomic responses of a human isolate ofLactobacillus plantarumexposed top-coumaric acid stress

(2012) Inés Reverón et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Genomic and SNP Analyses Demonstrate a Distant Separation of the Hospital and Community-Associated Clades of Enterococcus faecium

(2012) Jessica Galloway-Peña et al.   PLoS One

Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM

(2012) Joakim Mark Andersen et al.   PLoS One

Characterization of Pro-Inflammatory Flagellin Proteins Produced by Lactobacillus ruminis and Related Motile Lactobacilli

(2012) B. Anne Neville et al.   PLoS One

Pilus Biogenesis in Lactococcus lactis: Molecular Characterization and Role in Aggregation and Biofilm Formation

(2012) Virginie Oxaran et al.   PLoS One

Deep metaproteomic analysis of human salivary supernatant

(2012) Pratik Jagtap et al.   PROTEOMICS

Adhesion of Lactobacillus iners AB-1 to Human Fibronectin

(2012) Amy McMillan et al.   Reproductive Sciences

Aerobic Respiration Metabolism in Lactic Acid Bacteria and Uses in Biotechnology

(2012) Martin B. Pedersen et al.   Annual Review of Food Science and Technology

Genome Sequence of a Food Spoilage Lactic Acid Bacterium, Leuconostoc gasicomitatum LMG 18811T, in Association with Specific Spoilage Reactions

(2011) Per Johansson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global transcriptome response in Lactobacillus sakei during growth on ribose

(2011) Anette McLeod et al.   BMC MICROBIOLOGY

Comparative proteomic analysis of Lactobacillus plantarum for the identification of key proteins in bile tolerance

(2011) Erwann Hamon et al.   BMC MICROBIOLOGY

Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution

(2011) H. Bachmann et al.   GENOME RESEARCH

Comparative transcriptome analysis of Lactococcus lactis subsp. cremoris strains under conditions simulating Cheddar cheese manufacture

(2011) Amel Taïbi et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Complete Genome Sequence of Lactobacillus kefiranofaciens ZW3

(2011) Y. Wang et al.   JOURNAL OF BACTERIOLOGY

Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome

(2011) R. J. Siezen et al.   JOURNAL OF BACTERIOLOGY

Characterization of adhesive molecule with affinity to Caco-2 cells in Lactobacillus acidophilus by proteome analysis

(2011) Nobuhisa Ashida et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

(2011) Johanna Koponen et al.   Journal of Proteomics

Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

(2011) Brian M Forde et al.   Microbial Cell Factories

Systems solutions by lactic acid bacteria: from paradigms to practice

(2011) Willem M de Vos   Microbial Cell Factories

Investigation of the adaptation of Lactococcus lactis to isoleucine starvation integrating dynamic transcriptome and proteome information

(2011) Clémentine Dressaire et al.   Microbial Cell Factories

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera

(2011) Oksana Lukjancenko et al.   MICROBIAL ECOLOGY

The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri

(2011) Steven A. Frese et al.   PLoS Genetics

Dynamic Analysis of theLactococcus lactisTranscriptome in Cheeses Made from Milk Concentrated by Ultrafiltration Reveals Multiple Strategies of Adaptation to Stresses

(2010) Marina Cretenet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Diversity ofLactobacillus salivarius

(2010) Emma J. Raftis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of transient acid stress on the proteome of intestinal probiotic Lactobacillus reuteri

(2010) KiBeom Lee et al.   BIOCHEMISTRY-MOSCOW

BLAST-EXPLORER helps you building datasets for phylogenetic analysis

(2010) Alexis Dereeper et al.   BMC EVOLUTIONARY BIOLOGY

Time-resolved genetic responses of Lactococcus lactis to a dairy environment

(2010) Herwig Bachmann et al.   ENVIRONMENTAL MICROBIOLOGY

High temporal and inter-individual variation detected in the human ileal microbiota

(2010) Carien C. G. M. Booijink et al.   ENVIRONMENTAL MICROBIOLOGY

Non-starter lactic acid bacteria used to improve cheese quality and provide health benefits

(2010) Luca Settanni et al.   FOOD MICROBIOLOGY

Genetic characterization of the CcpA-dependent, cellobiose-specific PTS system comprising CelB, PtcB and PtcA that transports lactose in Lactococcus lactis IL1403

(2010) Tamara Aleksandrzak-Piekarczyk et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice

(2010) Maria L Marco et al.   ISME Journal

Genome Sequence of Lactobacillus amylovorus GRL1112

(2010) R. Kant et al.   JOURNAL OF BACTERIOLOGY

Inerolysin, a Cholesterol-Dependent Cytolysin Produced by Lactobacillus iners

(2010) R. Rampersaud et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of the Probiotic Lactobacillus casei Strain BL23

(2010) A. Maze et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Lactococcus lactis subsp. lactis KF147, a Plant-Associated Lactic Acid Bacterium

(2010) R. J. Siezen et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence Analysis of Leuconostoc kimchii IMSNU 11154

(2010) H.-M. Oh et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of Lactococcus lactis MG1363 (Revised) and NZ9000 and Comparative Physiological Studies

(2010) D. M. Linares et al.   JOURNAL OF BACTERIOLOGY

Evolved Lactococcus lactis Strains for Enhanced Expression of Recombinant Membrane Proteins

(2010) Daniel M. Linares et al.   JOURNAL OF MOLECULAR BIOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Lifestyle ofLactobacillus plantarumin the mouse caecum

(2009) Maria L. Marco et al.   ENVIRONMENTAL MICROBIOLOGY

The vaginal bacterial communities of Japanese women resemble those of women in other racial groups

(2009) Xia Zhou et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Possible promoter regions within the proteolytic system inStreptococcus thermophilusand their interaction with the CodY homolog

(2009) Fang Liu et al.   FEMS MICROBIOLOGY LETTERS

The synthesis and function of the alarmone (p)ppGpp in firmicutes

(2009) Christiane Wolz et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Heme and menaquinone induced electron transport in lactic acid bacteria

(2009) Rob Brooijmans et al.   Microbial Cell Factories

Joseph Lister: first use of a bacterium as a 'model organism' to illustrate the cause of infectious disease of humans

(2009) M. Santer   Notes and Records-The Royal Society Journal of the History of Science

Differential NF- B pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance

(2009) P. van Baarlen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

(2009) M. Kankainen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of salivaricin CRL 1328, a two-peptide bacteriocin produced by Lactobacillus salivarius CRL 1328 isolated from the human vagina

(2009) Esteban Vera Pingitore et al.   RESEARCH IN MICROBIOLOGY

Analysis of the Genome Sequence of Lactobacillus gasseri ATCC 33323 Reveals the Molecular Basis of an Autochthonous Intestinal Organism

(2008) M. A. Azcarate-Peril et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research

(2008) J. Walter   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo

(2008) Freddy J Troost et al.   BMC GENOMICS

Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production

(2008) H. Morita et al.   DNA RESEARCH

High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota

(2008) E G Zoetendal et al.   GUT

Complete Genome Sequence of Leuconostoc citreum KM20

(2008) J. F. Kim et al.   JOURNAL OF BACTERIOLOGY

Identification of Genes Associated with the Long-Gut-Persistence Phenotype of the Probiotic Lactobacillus johnsonii Strain NCC533 Using a Combination of Genomics and Transcriptome Analysis

(2008) E. Denou et al.   JOURNAL OF BACTERIOLOGY

DGGE and real-time PCR analysis of lactic acid bacteria in bacterial communities of the phyllosphere of lettuce

(2008) Jutta Zwielehner et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions

(2008) S. R. Konstantinov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA