Phylogenomic Network and Comparative Genomics Reveal a Diverged Member of the ϕKZ-Related Group, Marine Vibrio Phage ϕJM-2012

Molecular Aspects and Comparative Genomics of Bacteriophage Endolysins

(2013) H. Oliveira et al.   JOURNAL OF VIROLOGY

Networks: expanding evolutionary thinking

(2013) Eric Bapteste et al.   TRENDS IN GENETICS

A Phage Tubulin Assembles Dynamic Filaments by an Atypical Mechanism to Center Viral DNA within the Host Cell

(2012) James A. Kraemer et al.   CELL

A Salmonella Typhi homologue of bacteriophage muramidases controls typhoid toxin secretion

(2012) Hélène Hodak et al.   EMBO REPORTS

Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses

(2012) A.-C. Baudoux et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteriophage P70: Unique Morphology and Unrelatedness to Other Listeria Bacteriophages

(2012) M. M. Schmuki et al.   JOURNAL OF VIROLOGY

Expression and Functional Characterization of the First Bacteriophage-Encoded Chaperonin

(2012) Lidia P. Kurochkina et al.   JOURNAL OF VIROLOGY

Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giantPseudomonas aeruginosaphage φKZ

(2012) Julie A. Thomas et al.   MOLECULAR MICROBIOLOGY

Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution

(2012) Luan Chen et al.   NUCLEIC ACIDS RESEARCH

RNA-Seq-Based Metatranscriptomic and Microscopic Investigation Reveals Novel Metalloproteases of Neobodo sp. as Potential Virulence Factors for Soft Tunic Syndrome in Halocynthia roretzi

(2012) Ho Bin Jang et al.   PLoS One

Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1

(2012) A. P. Aalto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans

(2012) G. Sabehi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phage Pierces the Host Cell Membrane with the Iron-Loaded Spike

(2012) Christopher Browning et al.   STRUCTURE

Crystal structure and location of gp131 in the bacteriophage phiKZ virion

(2012) Lada V. Sycheva et al.   VIROLOGY

Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade

(2012) J. Grote et al.   mBio

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Complete Genome Sequence of the Giant Virus OBP and Comparative Genome Analysis of the Diverse  KZ-Related Phages

(2011) A. Cornelissen et al.   JOURNAL OF VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules

(2011) Gipsi Lima-Mendez et al.   RESEARCH IN MICROBIOLOGY

ARNold: A web tool for the prediction of Rho-independent transcription terminators

(2011) Magali Naville et al.   RNA Biology

Structural Conservation of the Myoviridae Phage Tail Sheath Protein Fold

(2011) Anastasia A. Aksyuk et al.   STRUCTURE

Phylogenomic networks

(2011) Tal Dagan   TRENDS IN MICROBIOLOGY

Bacteriophages and their genomes

(2011) Graham F Hatfull et al.   Current Opinion in Virology

Mobile Regulatory Cassettes Mediate Modular Shuffling in T4-Type Phage Genomes

(2010) Christine Arbiol et al.   Genome Biology and Evolution

Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1

(2010) Melissa Beth Duhaime et al.   ISME Journal

A Conserved Acetyl Esterase Domain Targets Diverse Bacteriophages to the Vi Capsular Receptor of Salmonella enterica Serovar Typhi

(2010) D. Pickard et al.   JOURNAL OF BACTERIOLOGY

The Pseudomonas aeruginosa generalized transducing phage  PA3 is a new member of the  KZ-like group of 'jumbo' phages, and infects model laboratory strains and clinical isolates from cystic fibrosis patients

(2010) R. Monson et al.   MICROBIOLOGY-SGM

Gene Network Visualization and Quantitative Synteny Analysis of more than 300 Marine T4-Like Phage Scaffolds from the GOS Metagenome

(2010) A. M. Comeau et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2.5 remote homologs

(2010) Anne Lopes et al.   NUCLEIC ACIDS RESEARCH

Structure of the bacteriophage T4 long tail fiber receptor-binding tip

(2010) S. G. Bartual et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence ofSynechococcushost genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution

(2009) Andrew D. Millard et al.   ENVIRONMENTAL MICROBIOLOGY

The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’

(2009) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

ACLAME: A CLAssification of Mobile genetic Elements, update 2010

(2009) Raphaël Leplae et al.   NUCLEIC ACIDS RESEARCH

Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin

(2009) P. G. Leiman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The phage   major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system

(2009) L. G. Pell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

(2008) G. Lima-Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of a Shigella effector reveals a new class of ubiquitin ligases

(2008) Yongqun Zhu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Characterization of Pseudomonas chlororaphis myovirus 201ϕ2-1 via genomic sequencing, mass spectrometry, and electron microscopy

(2008) Julie A. Thomas et al.   VIROLOGY