标题
High-throughput DNA barcoding for ecological network studies
作者
关键词
Coevolution, Ecological communities, Metagenomics, Microbes, Network theory, Next-generation sequencing
出版物
POPULATION ECOLOGY
Volume 57, Issue 1, Pages 37-51
出版商
Springer Nature
发表日期
2015-01-20
DOI
10.1007/s10144-014-0472-z
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Rapid, One-Step DNA Extraction for Insect Pest Identification by Using DNA Barcodes
- (2015) S. L. Ball et al. JOURNAL OF ECONOMIC ENTOMOLOGY
- Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
- (2014) Kenneth G Frey et al. BMC GENOMICS
- Ecological, historical and evolutionary determinants of modularity in weighted seed-dispersal networks
- (2014) Matthias Schleuning et al. ECOLOGY LETTERS
- Diversity and Spatial Structure of Belowground Plant–Fungal Symbiosis in a Mixed Subtropical Forest of Ectomycorrhizal and Arbuscular Mycorrhizal Plants
- (2014) Hirokazu Toju et al. PLoS One
- Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species
- (2014) Satoshi Yamamoto et al. PLoS One
- Complementary molecular information changes our perception of food web structure
- (2014) Helena K. Wirta et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- On the structural stability of mutualistic systems
- (2014) R. P. Rohr et al. SCIENCE
- Environmental DNA for wildlife biology and biodiversity monitoring
- (2014) Kristine Bohmann et al. TRENDS IN ECOLOGY & EVOLUTION
- Assembly of complex plant–fungus networks
- (2014) Hirokazu Toju et al. Nature Communications
- Next-Generation Sequencing Platforms
- (2013) Elaine R. Mardis Annual Review of Analytical Chemistry
- MODULAR: software for the autonomous computation of modularity in large network sets
- (2013) Flavia Maria Darcie Marquitti et al. ECOGRAPHY
- Network perspectives of ectomycorrhizal associations
- (2013) Mohammad Bahram et al. Fungal Ecology
- Plant-soil feedbacks: the past, the present and future challenges
- (2013) Wim H. van der Putten et al. JOURNAL OF ECOLOGY
- Complex plant-soil interactions enhance plant species diversity by delaying community convergence
- (2013) Tadashi Fukami et al. JOURNAL OF ECOLOGY
- Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead
- (2013) Simon Joly et al. Molecular Ecology Resources
- Emergence of structural and dynamical properties of ecological mutualistic networks
- (2013) Samir Suweis et al. NATURE
- Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
- (2013) Björn D. Lindahl et al. NEW PHYTOLOGIST
- Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
- (2013) Akifumi S. Tanabe et al. PLoS One
- Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest
- (2013) Hirokazu Toju et al. PLoS One
- Detection of the horizontal spatial structure of soil fungal communities in a natural forest
- (2013) Kohmei Kadowaki et al. POPULATION ECOLOGY
- The ghost of nestedness in ecological networks
- (2013) Phillip P. A. Staniczenko et al. Nature Communications
- How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants
- (2013) Hirokazu Toju et al. Ecology and Evolution
- High-Throughput Sequencing: A Roadmap Toward Community Ecology
- (2013) Timothée Poisot et al. Ecology and Evolution
- Community composition of root-associated fungi in aQuercus-dominated temperate forest: “codominance” of mycorrhizal and root-endophytic fungi
- (2013) Hirokazu Toju et al. Ecology and Evolution
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Stability criteria for complex ecosystems
- (2012) Stefano Allesina et al. NATURE
- A framework for human microbiome research
- (2012) NATURE
- On the application of network theory to arbuscular mycorrhizal fungi-plant interactions: the importance of basic assumptions
- (2012) Tancredi Caruso et al. NEW PHYTOLOGIST
- The network structure of plant-arbuscular mycorrhizal fungi
- (2012) A. Montesinos-Navarro et al. NEW PHYTOLOGIST
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
- (2012) Hirokazu Toju et al. PLoS One
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversity of Interaction Types and Ecological Community Stability
- (2012) A. Mougi et al. SCIENCE
- The Application of Ecological Theory Toward an Understanding of the Human Microbiome
- (2012) E. K. Costello et al. SCIENCE
- CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
- (2012) Jan Pawlowski et al. PLOS BIOLOGY
- Evaluation of Subsampling-Based Normalization Strategies for Tagged High-Throughput Sequencing Data Sets from Gut Microbiomes
- (2011) Daniel Aguirre de Cárcer et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Analysis of a hyper-diverse seed dispersal network: modularity and underlying mechanisms
- (2011) Camila I. Donatti et al. ECOLOGY LETTERS
- Evolution and coevolution in mutualistic networks
- (2011) Paulo R. Guimarães Jr et al. ECOLOGY LETTERS
- Surveillance of fish species composition using environmental DNA
- (2011) Toshifumi Minamoto et al. LIMNOLOGY
- Who is eating what: diet assessment using next generation sequencing
- (2011) FRANCOIS POMPANON et al. MOLECULAR ECOLOGY
- Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities
- (2011) R. Henrik Nilsson et al. NEW PHYTOLOGIST
- Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
- (2011) et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis
- (2011) E. T. Kiers et al. SCIENCE
- Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences
- (2011) David S. Hibbett et al. Fungal Biology Reviews
- ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
- (2010) Eva Bellemain et al. BMC MICROBIOLOGY
- A straightforward computational approach for measuring nestedness using quantitative matrices
- (2010) Mário Almeida-Neto et al. ENVIRONMENTAL MODELLING & SOFTWARE
- Diversity and infection prevalence of endosymbionts in natural populations of the chestnut weevil: relevance of local climate and host plants
- (2010) HIROKAZU TOJU et al. MOLECULAR ECOLOGY
- Negative plant–soil feedback predicts tree-species relative abundance in a tropical forest
- (2010) Scott A. Mangan et al. NATURE
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
- (2010) Leho Tedersoo et al. NEW PHYTOLOGIST
- The UNITE database for molecular identification of fungi - recent updates and future perspectives
- (2010) Kessy Abarenkov et al. NEW PHYTOLOGIST
- Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species
- (2010) Shilin Chen et al. PLoS One
- Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks
- (2010) E. Thebault et al. SCIENCE
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Conservation of species interaction networks
- (2009) Jason M. Tylianakis et al. BIOLOGICAL CONSERVATION
- Endosymbiotic Bacteria in Insects: Their Diversity and Culturability
- (2009) Yoshitomo Kikuchi MICROBES AND ENVIRONMENTS
- Progress towards DNA barcoding of fungi
- (2009) KEITH A. SEIFERT Molecular Ecology Resources
- The architecture of mutualistic networks minimizes competition and increases biodiversity
- (2009) Ugo Bastolla et al. NATURE
- Architecture of the wood-wide web: Rhizopogon spp. genets link multiple Douglas-fir cohorts
- (2009) Kevin J. Beiler et al. NEW PHYTOLOGIST
- A DNA barcode for land plants
- (2009) et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sanctions, Cooperation, and the Stability of Plant-Rhizosphere Mutualisms
- (2008) E. Toby Kiers et al. Annual Review of Ecology Evolution and Systematics
- Fungal Community Ecology: A Hybrid Beast with a Molecular Master
- (2008) Kabir G. Peay et al. BIOSCIENCE
- Global change and species interactions in terrestrial ecosystems
- (2008) Jason M. Tylianakis et al. ECOLOGY LETTERS
- Hierarchical structure and the prediction of missing links in networks
- (2008) Aaron Clauset et al. NATURE
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- (2008) Micah Hamady et al. NATURE METHODS
- A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement
- (2008) Mário Almeida-Neto et al. OIKOS
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- Building trophic modules into a persistent food web
- (2008) M. Kondoh PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA barcoding for ecologists
- (2008) Alice Valentini et al. TRENDS IN ECOLOGY & EVOLUTION
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