Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead

Metabolic Rate and Climatic Fluctuations Shape Continental Wide Pattern of Genetic Divergence and Biodiversity in Fishes

(2013) Julien April et al.   PLoS One

Experimental evidence that evolutionarily diverse assemblages result in higher productivity

(2013) M. W. Cadotte   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)

(2013) Lenaïg G. Hemery et al.   ZooKeys

Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels

(2013) Andrés Baselga et al.   Nature Communications

High-Throughput Sequencing: A Roadmap Toward Community Ecology

(2013) Timothée Poisot et al.   Ecology and Evolution

Ecophylogenetics: advances and perspectives

(2012) Nicolas Mouquet et al.   BIOLOGICAL REVIEWS

Assessing the effects of spatial contingency and environmental filtering on metacommunity phylogenetics

(2012) Pedro R. Peres-Neto et al.   ECOLOGY

Habitat specialization and the role of trait lability in structuring diverse willow (genusSalix) communities

(2012) Jessica A. Savage et al.   ECOLOGY

IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS

(2012) Carl Boettiger et al.   EVOLUTION

Exploring the phylogenetic history of mammal species richness

(2012) T. Jonathan Davies et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

(2012) H. R. TAYLOR et al.   Molecular Ecology Resources

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling

(2012) John J. Wiens et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Method for Handling Missing Species in Diversification Analysis Applicable to Randomly or Nonrandomly Sampled Phylogenies

(2012) Natalie Cusimano et al.   SYSTEMATIC BIOLOGY

Phylogenetic clustering increases with elevation for microbes

(2012) Jianjun Wang et al.   Environmental Microbiology Reports

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes

(2011) S. A. Price et al.   ECOLOGY LETTERS

Phylogenetic origins of local-scale diversity patterns and the causes of Amazonian megadiversity

(2011) John J. Wiens et al.   ECOLOGY LETTERS

Phylogenetic tests of community assembly across regional to continental scales in tropical and subtropical rain forests

(2011) Robert Kooyman et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing

(2011) INGA HIIESALU et al.   MOLECULAR ECOLOGY

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

(2011) PRASAD R. KESANAKURTI et al.   MOLECULAR ECOLOGY

Barcoding a Quantified Food Web: Crypsis, Concepts, Ecology and Hypotheses

(2011) M. Alex Smith et al.   PLoS One

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

(2011) Emma E. Goldberg et al.   SYSTEMATIC BIOLOGY

Evolutionary informatics: unifying knowledge about the diversity of life

(2011) Cynthia S. Parr et al.   TRENDS IN ECOLOGY & EVOLUTION

Resolving Darwin’s naturalization conundrum: a quest for evidence

(2010) Wilfried Thuiller et al.   DIVERSITY AND DISTRIBUTIONS

Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography

(2010) Mathew A. Leibold et al.   ECOLOGY LETTERS

Key innovations within a geographical context in flowering plants: towards resolving Darwin’s abominable mystery

(2010) Jana C. Vamosi et al.   ECOLOGY LETTERS

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

Global patterns in the biogeography of bacterial taxa

(2010) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

Using coloured roots to study root interaction and competition in intercropped legumes and non-legumes

(2010) G. Tosti et al.   Journal of Plant Ecology

INVITED REVIEW: Spatial modelling and landscape-level approaches for visualizing intra-specific variation

(2010) HENRI A. THOMASSEN et al.   MOLECULAR ECOLOGY

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Landscape genetics: where are we now?

(2010) ANDREW STORFER et al.   MOLECULAR ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Using phylogenetics to detect pollinator-mediated floral evolution

(2010) Stacey DeWitt Smith   NEW PHYTOLOGIST

Population genetics of ecological communities with DNA barcodes: An example from New Guinea Lepidoptera

(2010) K. J. Craft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Traits and Diversification

(2010) Richard G. FitzJohn   SYSTEMATIC BIOLOGY

Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities

(2009) A Barberán et al.   AQUATIC MICROBIAL ECOLOGY

Biodiversity informatics: automated approaches for documenting global biodiversity patterns and processes

(2009) R. Guralnick et al.   BIOINFORMATICS

Ecological linkages between community and genetic diversity in zooplankton among boreal shield lakes

(2009) Alison M. Derry et al.   ECOLOGY

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

(2009) Steven W. Kembel   ECOLOGY LETTERS

Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions

(2009) Daniel L. Rabosky   ECOLOGY LETTERS

Quantifying and disentangling dispersal in metacommunities: how close have we come? How far is there to go?

(2009) Bailey Jacobson et al.   LANDSCAPE ECOLOGY

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

A Bayesian approach for evaluating the impact of historical events on rates of diversification

(2009) B. R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

(2009) W. J. Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

Invasive species, ecosystem services and human well-being

(2009) Liba Pejchar et al.   TRENDS IN ECOLOGY & EVOLUTION

Climate, Niche Evolution, and Diversification of the “Bird‐Cage” Evening Primroses (Oenothera, Sections Anogra and Kleinia)

(2008) Margaret E. K. Evans et al.   AMERICAN NATURALIST

Darwin’s naturalization conundrum: dissecting taxonomic patterns of species invasions

(2008) Jeffrey M. Diez et al.   ECOLOGY LETTERS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

DISTINGUISHING COEVOLUTION FROM COVICARIANCE IN AN OBLIGATE POLLINATION MUTUALISM: ASYNCHRONOUS DIVERGENCE IN JOSHUA TREE AND ITS POLLINATORS

(2008) Christopher Irwin Smith et al.   EVOLUTION

Emerging patterns in the comparative analysis of phylogenetic community structure

(2008) S. M. VAMOSI et al.   MOLECULAR ECOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

DNA barcoding insect-host plant associations

(2008) J. A Jurado-Rivera et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION

Does phylogenetic relatedness influence the strength of competition among vascular plants?

(2007) James F. Cahill et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS