Genome-wide analysis onChlamydomonas reinhardtiireveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes

Organization, function and substrates of the essential Clp protease system in plastids

(2015) Kenji Nishimura et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains

(2015) Guangxi Wu et al.   BMC GENOMICS

20S proteasome activity is modified via S-glutathionylation based on intracellular redox status of the yeast Saccharomyces cerevisiae: Implications for the degradation of oxidized proteins

(2014) Marilene Demasi et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

The Path to Triacylglyceride Obesity in the sta6 Strain of Chlamydomonas reinhardtii

(2014) Ursula Goodenough et al.   EUKARYOTIC CELL

Spatial H2O2 Signaling Specificity: H2O2 from Chloroplasts and Peroxisomes Modulates the Plant Transcriptome Differentially

(2014) Nasser Sewelam et al.   Molecular Plant

Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism

(2014) S. Schmollinger et al.   PLANT CELL

Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control

(2014) S. Ramundo et al.   PLANT CELL

The Chlamydomonas genome project: a decade on

(2014) Ian K. Blaby et al.   TRENDS IN PLANT SCIENCE

Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii

(2014) Setsuko Wakao et al.   eLife

Zinc Deficiency Impacts CO2Assimilation and Disrupts Copper Homeostasis inChlamydomonas reinhardtii

(2013) Davin Malasarn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The GreenCut: re-evaluation of physiological role of previously studied proteins and potential novel protein functions

(2013) Mark L. Heinnickel et al.   PHOTOSYNTHESIS RESEARCH

Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant

(2013) I. K. Blaby et al.   PLANT CELL

COPPER RESPONSE REGULATOR1-Dependent and -Independent Responses of the Chlamydomonas reinhardtii Transcriptome to Dark Anoxia

(2013) A. Hemschemeier et al.   PLANT CELL

Glutathione synthesis

(2012) Shelly C. Lu   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Role of sulfiredoxin as a regulator of peroxiredoxin function and regulation of its expression

(2012) Woojin Jeong et al.   FREE RADICAL BIOLOGY AND MEDICINE

Impact of Oxidative Stress on Ascorbate Biosynthesis inChlamydomonasvia Regulation of theVTC2Gene Encoding a GDP-l-galactose Phosphorylase

(2012) Eugen I. Urzica et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mononuclear Iron Enzymes Are Primary Targets of Hydrogen Peroxide Stress

(2012) Adil Anjem et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systems andTrans-System Level Analysis Identifies Conserved Iron Deficiency Responses in the Plant Lineage

(2012) Eugen I. Urzica et al.   PLANT CELL

Down-regulation of catalase activity allows transient accumulation of a hydrogen peroxide signal inChlamydomonas reinhardtii

(2012) LAURE MICHELET et al.   PLANT CELL AND ENVIRONMENT

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses

(2012) A. G. Lai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reactive oxygen species and transcript analysis upon excess light treatment in wild-type Arabidopsis thaliana vs a photosensitive mutant lacking zeaxanthin and lutein

(2011) Alessandro Alboresi et al.   BMC PLANT BIOLOGY

The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage

(2011) Steven J. Karpowicz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systems Biology Approach inChlamydomonasReveals Connections between Copper Nutrition and Multiple Metabolic Steps

(2011) Madeli Castruita et al.   PLANT CELL

Glutathione in plants: an integrated overview

(2011) GRAHAM NOCTOR et al.   PLANT CELL AND ENVIRONMENT

Iron enzyme ribulose-5-phosphate 3-epimerase in Escherichia coli is rapidly damaged by hydrogen peroxide but can be protected by manganese

(2011) J. M. Sobota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrogen peroxide: a Jekyll and Hyde signalling molecule

(2011) D R Gough et al.   Cell Death & Disease

Roles of xanthophyll carotenoids in protection against photoinhibition and oxidative stress in the cyanobacterium Synechococcus sp. strain PCC 7002

(2010) Yuehui Zhu et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Hydrogen peroxide inactivates the Escherichia coli Isc iron-sulphur assembly system, and OxyR induces the Suf system to compensate

(2010) Soojin Jang et al.   MOLECULAR MICROBIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

RNA-Seq Analysis of Sulfur-DeprivedChlamydomonasCells Reveals Aspects of Acclimation Critical for Cell Survival

(2010) David González-Ballester et al.   PLANT CELL

H2O2-Activated Up-Regulation of Glutathione in Arabidopsis Involves Induction of Genes Encoding Enzymes Involved in Cysteine Synthesis in the Chloroplast

(2009) Guillaume Queval et al.   Molecular Plant

Function and regulation of the glutathione peroxidase homologous gene GPXH/GPX5 in Chlamydomonas reinhardtii

(2009) Beat B. Fischer et al.   PLANT MOLECULAR BIOLOGY

Redox Regulation in Photosynthetic Organisms: Signaling, Acclimation, and Practical Implications

(2008) Christine H. Foyer et al.   ANTIOXIDANTS & REDOX SIGNALING

The BAG proteins: a ubiquitous family of chaperone regulators

(2008) M. Kabbage et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Peroxiredoxin and Glutathione Peroxidase Families in Chlamydomonas reinhardtii

(2008) R. Dayer et al.   GENETICS

Hydrogen Peroxide-Induced Gene Expression across Kingdoms: A Comparative Analysis

(2008) K. Vandenbroucke et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pond Scum Genomics: The Genomes of Chlamydomonas and Ostreococcus

(2008) G. Peers et al.   PLANT CELL

Photosynthetic electron flow affects H2O2 signaling by inactivation of catalase in Chlamydomonas reinhardtii

(2008) Ning Shao et al.   PLANTA