RNA sequencing: current and prospective uses in metabolic research

Function and Regulation of the Na+-Ca2+Exchanger NCX3 Splice Variants in Brain and Skeletal Muscle

(2014) Lauriane Y. M. Michel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Variation in RNA-Seq Transcriptome Profiles of Peripheral Whole Blood from Healthy Individuals with and without Globin Depletion

(2014) Heesun Shin et al.   PLoS One

Specific MUC1 Splice Variants Are Correlated With Tumor Progression in Esophageal Cancer

(2014) Kolsoum Rezaie Kahkhaie et al.   WORLD JOURNAL OF SURGERY

Chromatin signature of widespread monoallelic expression

(2014) Anwesha Nag et al.   eLife

A comparison of methods for differential expression analysis of RNA-seq data

(2013) Charlotte Soneson et al.   BMC BIOINFORMATICS

Autosomal monoallelic expression: genetics of epigenetic diversity?

(2013) Virginia Savova et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

RNA Sequencing Identifies Dysregulation of the Human Pancreatic Islet Transcriptome by the Saturated Fatty Acid Palmitate

(2013) Miriam Cnop et al.   DIABETES

Genomics: the state of the art in RNA-seq analysis

(2013) Ian Korf   NATURE METHODS

Systematic evaluation of spliced alignment programs for RNA-seq data

(2013) Pär G Engström et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

The Human Pancreatic Islet Transcriptome: Expression of Candidate Genes for Type 1 Diabetes and the Impact of Pro-Inflammatory Cytokines

(2012) Décio L. Eizirik et al.   PLoS Genetics

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

(2011) Tim R Mercer et al.   NATURE BIOTECHNOLOGY

Pancreatic β-cells activate a JunB/ATF3-dependent survival pathway during inflammation

(2011) E N Gurzov et al.   ONCOGENE

Understanding mechanisms underlying human gene expression variation with RNA sequencing

(2010) Joseph K. Pickrell et al.   NATURE

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

(2010) Hugues Richard et al.   NUCLEIC ACIDS RESEARCH

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

(2009) Jacob F. Degner et al.   BIOINFORMATICS

3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer

(2009) Yan W Asmann et al.   BMC GENOMICS

RNA and Disease

(2009) Thomas A. Cooper et al.   CELL

Cytokines Interleukin-1  and Tumor Necrosis Factor-  Regulate Different Transcriptional and Alternative Splicing Networks in Primary  -Cells

(2009) F. Ortis et al.   DIABETES

Nuclear Degradation of Wilms Tumor 1-associating Protein and Survivin Splice Variant Switching Underlie IGF-1-mediated Survival

(2009) Theodore W. Small et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Use of a systems biology approach to understand pancreatic β-cell death in Type 1 diabetes

(2008) Decio L. Eizirik et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE