标题
Identification of slow molecular order parameters for Markov model construction
作者
关键词
-
出版物
JOURNAL OF CHEMICAL PHYSICS
Volume 139, Issue 1, Pages 015102
出版商
AIP Publishing
发表日期
2013-07-04
DOI
10.1063/1.4811489
参考文献
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- (2013) Christian R. Schwantes et al. Journal of Chemical Theory and Computation
- Accounting for the kinetics in order parameter analysis: Lessons from theoretical models and a disordered peptide
- (2012) Ganna Berezovska et al. JOURNAL OF CHEMICAL PHYSICS
- EMMA: A Software Package for Markov Model Building and Analysis
- (2012) Martin Senne et al. Journal of Chemical Theory and Computation
- Estimating the Eigenvalue Error of Markov State Models
- (2012) Natasa Djurdjevac et al. MULTISCALE MODELING & SIMULATION
- Kinetic characterization of the critical step in HIV-1 protease maturation
- (2012) S. K. Sadiq et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simple few-state models reveal hidden complexity in protein folding
- (2012) K. A. Beauchamp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites
- (2012) G. R. Bowman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-Molecule Fluorescence Experiments Determine Protein Folding Transition Path Times
- (2012) H. S. Chung et al. SCIENCE
- Markov models and dynamical fingerprints: Unraveling the complexity of molecular kinetics
- (2011) Bettina G. Keller et al. CHEMICAL PHYSICS
- METAGUI. A VMD interface for analyzing metadynamics and molecular dynamics simulations
- (2011) Xevi Biarnés et al. COMPUTER PHYSICS COMMUNICATIONS
- Intrinsically disordered proteins from A to Z
- (2011) Vladimir N. Uversky INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Slow dynamics in protein fluctuations revealed by time-structure based independent component analysis: The case of domain motions
- (2011) Yusuke Naritomi et al. JOURNAL OF CHEMICAL PHYSICS
- Determination of reaction coordinates via locally scaled diffusion map
- (2011) Mary A. Rohrdanz et al. JOURNAL OF CHEMICAL PHYSICS
- Relaxation mode analysis of a peptide system: Comparison with principal component analysis
- (2011) Ayori Mitsutake et al. JOURNAL OF CHEMICAL PHYSICS
- Markov models of molecular kinetics: Generation and validation
- (2011) Jan-Hendrik Prinz et al. JOURNAL OF CHEMICAL PHYSICS
- MSMBuilder2: Modeling Conformational Dynamics on the Picosecond to Millisecond Scale
- (2011) Kyle A. Beauchamp et al. Journal of Chemical Theory and Computation
- Dynamical fingerprints for probing individual relaxation processes in biomolecular dynamics with simulations and kinetic experiments
- (2011) F. Noe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations
- (2011) I. Buch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Complex Folding Network of Single Calmodulin Molecules
- (2011) J. Stigler et al. SCIENCE
- How Fast-Folding Proteins Fold
- (2011) K. Lindorff-Larsen et al. SCIENCE
- Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein
- (2011) Menahem Pirchi et al. Nature Communications
- The Free Energy Landscape of Small Molecule Unbinding
- (2011) Danzhi Huang et al. PLoS Computational Biology
- Dynamics of protein folding: Probing the kinetic network of folding–unfolding transitions with experiment and theory
- (2010) Ginka S. Buchner et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing
- (2010) I. Buch et al. Journal of Chemical Information and Modeling
- Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces
- (2010) Michele Seeber et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Molecular Simulation ofab InitioProtein Folding for a Millisecond Folder NTL9(1−39)
- (2010) Vincent A. Voelz et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Atomistic Folding Simulations of the Five-Helix Bundle Protein λ6−85
- (2010) Gregory R. Bowman et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- On the Approximation Quality of Markov State Models
- (2010) Marco Sarich et al. MULTISCALE MODELING & SIMULATION
- Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family
- (2010) Beth G. Wensley et al. NATURE
- Full distance-resolved folding energy landscape of one single protein molecule
- (2010) J. C. M. Gebhardt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Atomic-Level Characterization of the Structural Dynamics of Proteins
- (2010) D. E. Shaw et al. SCIENCE
- Hydrogen-Bond Driven Loop-Closure Kinetics in Unfolded Polypeptide Chains
- (2010) Isabella Daidone et al. PLoS Computational Biology
- Reactive flux and folding pathways in network models of coarse-grained protein dynamics
- (2009) Alexander Berezhkovskii et al. JOURNAL OF CHEMICAL PHYSICS
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- (2009) Gregory R. Bowman et al. JOURNAL OF CHEMICAL PHYSICS
- ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale
- (2009) M. J. Harvey et al. Journal of Chemical Theory and Computation
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- (2009) Philipp Metzner et al. MULTISCALE MODELING & SIMULATION
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- (2009) A. Gansen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2009) Y. Santoso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
- (2009) Frank Noé et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transition networks for modeling the kinetics of conformational change in macromolecules
- (2008) Frank Noé et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Building Markov state models along pathways to determine free energies and rates of transitions
- (2008) Albert C. Pan et al. JOURNAL OF CHEMICAL PHYSICS
- Probability distributions of molecular observables computed from Markov models
- (2008) Frank Noé JOURNAL OF CHEMICAL PHYSICS
- Solvent Electrostriction-Driven Peptide Folding Revealed by Quasi-Gaussian Entropy Theory and Molecular Dynamics Simulation
- (2008) Frank Noé et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Coarse Master Equations for Peptide Folding Dynamics†
- (2008) Nicolae-Viorel Buchete et al. JOURNAL OF PHYSICAL CHEMISTRY B
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