Atomic-Level Characterization of the Structural Dynamics of Proteins

(Un)Folding Mechanisms of the FBP28 WW Domain in Explicit Solvent Revealed by Multiple Rare Event Simulation Methods

(2010) Jarek Juraszek et al.   BIOPHYSICAL JOURNAL

Protein folding dynamics: The diffusion-collision model and experimental data

(2010) Martin Karplus et al.   PROTEIN SCIENCE

The Fip35 WW Domain Folds with Structural and Mechanistic Heterogeneity in Molecular Dynamics Simulations

(2009) Daniel L. Ensign et al.   BIOPHYSICAL JOURNAL

Force Field Bias in Protein Folding Simulations

(2009) Peter L. Freddolino et al.   BIOPHYSICAL JOURNAL

Transient Non-native Hydrogen Bonds Promote Activation of a Signaling Protein

(2009) Alexandra K. Gardino et al.   CELL

Long-timescale molecular dynamics simulations of protein structure and function

(2009) John L Klepeis et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The transition state transit time of WW domain folding is controlled by energy landscape roughness

(2009) Feng Liu et al.   JOURNAL OF CHEMICAL PHYSICS

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

(2009) H. S. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations

(2009) Frank Noé et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence determinants of thermodynamic stability in a WW domain-An all-β-sheet protein

(2009) Marcus Jäger et al.   PROTEIN SCIENCE

Ten-Microsecond Molecular Dynamics Simulation of a Fast-Folding WW Domain

(2008) Peter L. Freddolino et al.   BIOPHYSICAL JOURNAL

Nanosecond to Microsecond Protein Dynamics Probed by Magnetic Relaxation Dispersion of Buried Water Molecules

(2008) Erik Persson et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

An experimental survey of the transition between two-state and downhill protein folding scenarios

(2008) F. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low'  -values

(2008) C. D. Geierhaas et al.   PROTEIN ENGINEERING DESIGN & SELECTION