Progress and challenges in the automated construction of Markov state models for full protein systems

Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint

(2009) Sergio Bacallado et al.   JOURNAL OF CHEMICAL PHYSICS

Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories

(2009) S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Protein Folding Problem

(2008) Ken A. Dill et al.   Annual Review of Biophysics

Transition networks for modeling the kinetics of conformational change in macromolecules

(2008) Frank Noé et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Coarse Master Equations for Peptide Folding Dynamics†

(2008) Nicolae-Viorel Buchete et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Structural Insight into RNA Hairpin Folding Intermediates

(2008) Gregory R. Bowman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Simulated tempering yields insight into the low-resolution Rosetta scoring functions

(2008) Gregory R. Bowman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS