How do metal ions direct ribozyme folding?

Reduced Model Captures Mg2+-RNA Interaction Free Energy of Riboswitches

(2014) Ryan L. Hayes et al.   BIOPHYSICAL JOURNAL

Coarse-Grained Model for Predicting RNA Folding Thermodynamics

(2013) Natalia A. Denesyuk et al.   JOURNAL OF PHYSICAL CHEMISTRY B

High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations

(2013) A. A. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA and Its Ionic Cloud: Solution Scattering Experiments and Atomically Detailed Simulations

(2012) Serdal Kirmizialtin et al.   BIOPHYSICAL JOURNAL

Cooperative Tertiary Interaction Network Guides RNA Folding

(2012) Reza Behrouzi et al.   CELL

Cations in charge: magnesium ions in RNA folding and catalysis

(2012) Jessica C Bowman et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

To milliseconds and beyond: challenges in the simulation of protein folding

(2012) Thomas J Lane et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Charged Nucleobases and Their Potential for RNA Catalysis

(2011) Jennifer L. Wilcox et al.   ACCOUNTS OF CHEMICAL RESEARCH

The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks

(2011) Samuel E. Butcher et al.   ACCOUNTS OF CHEMICAL RESEARCH

Salt Contribution to RNA Tertiary Structure Folding Stability

(2011) Zhi-Jie Tan et al.   BIOPHYSICAL JOURNAL

Cooperative and Directional Folding of the preQ1Riboswitch Aptamer Domain

(2011) Jun Feng et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Crowding Promotes the Switch from Hairpin to Pseudoknot Conformation in Human Telomerase RNA

(2011) Natalia A. Denesyuk et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

How Fast-Folding Proteins Fold

(2011) K. Lindorff-Larsen et al.   SCIENCE

Multistage Collapse of a Bacterial Ribozyme Observed by Time-Resolved Small-Angle X-ray Scattering

(2010) Joon Ho Roh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways

(2010) P. C. Whitford et al.   RNA

Atomic-Level Characterization of the Structural Dynamics of Proteins

(2010) D. E. Shaw et al.   SCIENCE

Nonlocal Helix Formation Is Key to Understanding S-Adenosylmethionine-1 Riboswitch Function

(2009) Paul C. Whitford et al.   BIOPHYSICAL JOURNAL

Structural Rearrangements Linked to Global Folding Pathways of the Azoarcus Group I Ribozyme

(2009) Seema Chauhan et al.   JOURNAL OF MOLECULAR BIOLOGY

Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures

(2009) S. S. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA Folding: Conformational Statistics, Folding Kinetics, and Ion Electrostatics

(2008) Shi-Jie Chen   Annual Review of Biophysics

RNA Folding: Thermodynamic and Molecular Descriptions of the Roles of Ions

(2008) David E. Draper   BIOPHYSICAL JOURNAL

Relative Stability of Helices Determines the Folding Landscape of Adenine Riboswitch Aptamers

(2008) Jong-Chin Lin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY