Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves

Regulation of hypometabolism: insights into epigenetic controls

(2015) K. B. Storey   JOURNAL OF EXPERIMENTAL BIOLOGY

Heterozygote advantage at MHCDRBmay influence response to infectious disease epizootics

(2015) Amy J. Osborne et al.   MOLECULAR ECOLOGY

Genetic subdivision and candidate genes under selection in North American grey wolves

(2015) Rena M. Schweizer et al.   MOLECULAR ECOLOGY

Targeted capture in evolutionary and ecological genomics

(2015) Matthew R. Jones et al.   MOLECULAR ECOLOGY

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

(2015) Ryan J. Haasl et al.   MOLECULAR ECOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

(2014) Shiping Liu et al.   CELL

Heavily hunted wolves have higher stress and reproductive steroids than wolves with lower hunting pressure

(2014) Heather M. Bryan et al.   FUNCTIONAL ECOLOGY

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Exploring the Occurrence of Classic Selective Sweeps in Humans Using Whole-Genome Sequencing Data Sets

(2014) Maud Fagny et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fine-scale population epigenetic structure in relation to gastrointestinal parasite load in red grouse (Lagopus lagopus scotica)

(2014) Marius A. Wenzel et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

The emerging era of genomic data integration for analyzing splice isoform function

(2014) Hong-Dong Li et al.   TRENDS IN GENETICS

Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

(2014) Saber Qanbari et al.   PLoS Genetics

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

Hypoxia Adaptations in the Grey Wolf (Canis lupus chanco) from Qinghai-Tibet Plateau

(2014) Wenping Zhang et al.   PLoS Genetics

Dehydration mediated microRNA response in the African clawed frog Xenopus laevis

(2013) Cheng-Wei Wu et al.   GENE

Genome-wide signatures of population bottlenecks and diversifying selection in European wolves

(2013) M Pilot et al.   HEREDITY

The Promise and Practicality of Population Genomics Research with Endangered Species

(2013) George H. Perry   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Ecological determinants of clinal morphological variation in the cranium of the North American gray wolf

(2013) F. Robin O'Keefe et al.   JOURNAL OF MAMMALOGY

The Winged Helix Transcription Factor Foxa3 Regulates Adipocyte Differentiation and Depot-Selective Fat Tissue Expansion

(2013) Lingyan Xu et al.   MOLECULAR AND CELLULAR BIOLOGY

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis)

(2013) Francois Olivier Hebert et al.   MOLECULAR ECOLOGY

Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland

(2013) Thomas A. White et al.   MOLECULAR ECOLOGY

Genome-wide signatures of convergent evolution in echolocating mammals

(2013) Joe Parker et al.   NATURE

Recent human adaptation: genomic approaches, interpretation and insights

(2013) Laura B. Scheinfeldt et al.   NATURE REVIEWS GENETICS

Genetic and Structure-Function Studies of Missense Mutations in Human Endothelial Lipase

(2013) Hamid Razzaghi et al.   PLoS One

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

Genetics of Pigmentation in Dogs and Cats

(2013) Christopher B. Kaelin et al.   Annual Review of Animal Biosciences

The impact of equilibrium assumptions on tests of selection

(2013) Jessica L. Crisci et al.   Frontiers in Genetics

Climate change and the ecology and evolution of Arctic vertebrates

(2012) Olivier Gilg et al.   Annals of the New York Academy of Sciences

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Fine mapping of a linkage peak with integration of lipid traits identifies novel coronary artery disease genes on chromosome 5

(2012) Daniel K Nolan et al.   BMC GENETICS

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

(2012) Ke Bi et al.   BMC GENOMICS

EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE

(2012) Vera S. Domingues et al.   EVOLUTION

Utilizing Graph Theory to Select the Largest Set of Unrelated Individuals for Genetic Analysis

(2012) Jeffrey Staples et al.   GENETIC EPIDEMIOLOGY

Disentangling the Roles of History and Local Selection in Shaping Clinal Variation of Allele Frequencies and Gene Expression in Norway Spruce ( Picea abies )

(2012) Jun Chen et al.   GENETICS

MicroRNAs in adipose tissue: their role in adipogenesis and obesity

(2012) C Hilton et al.   INTERNATIONAL JOURNAL OF OBESITY

September Arctic sea ice predicted to disappear near 2°C global warming above present

(2012) Irina Mahlstein et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Differences in Selection Drive Olfactory Receptor Genes in Different Directions in Dogs and Wolf

(2012) Rui Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Proteomics in evolutionary ecology: linking the genotype with the phenotype

(2012) ANGEL P. DIZ et al.   MOLECULAR ECOLOGY

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

(2012) Wenqing Fu et al.   NATURE

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

(2012) Brant C. Faircloth et al.   PLoS One

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Human pigmentation genes under environmental selection

(2012) Richard A Sturm et al.   GENOME BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection

(2011) F W Albert et al.   HEREDITY

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Modeling Effects of Environmental Change on Wolf Population Dynamics, Trait Evolution, and Life History

(2011) T. Coulson et al.   SCIENCE

Small RNA sequencing reveals miR-642a-3p as a novel adipocyte-specific microRNA and miR-30 as a key regulator of human adipogenesis

(2011) Laure-Emmanuelle Zaragosi et al.   GENOME BIOLOGY

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Progress and Promise of Genome-Wide Association Studies for Human Complex Trait Genetics

(2010) B. E. Stranger et al.   GENETICS

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

(2010) Bridgett M. vonHoldt et al.   NATURE

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

Data quality control in genetic case-control association studies

(2010) Carl A Anderson et al.   Nature Protocols

Human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency

(2010) A. M. Hancock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracking footprints of artificial selection in the dog genome

(2010) J. M. Akey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection

(2010) S. R. Grossman et al.   SCIENCE

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

(2010) H. A. Burbano et al.   SCIENCE

Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data

(2010) Abigail Bigham et al.   PLoS Genetics

Frontiers in identifying conservation units: from neutral markers to adaptive genetic variation

(2009) B. Gebremedhin et al.   ANIMAL CONSERVATION

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

(2009) Stefan Kurtz et al.   BMC GENOMICS

Linkage Disequilibrium and Demographic History of Wild and Domestic Canids

(2009) M. M. Gray et al.   GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Body size and predatory performance in wolves: is bigger better?

(2009) Daniel R. MacNulty et al.   JOURNAL OF ANIMAL ECOLOGY

Ecological factors drive differentiation in wolves from British Columbia

(2009) Violeta Muñoz-Fuentes et al.   JOURNAL OF BIOGEOGRAPHY

Implications of predatory specialization for cranial form and function in canids

(2009) G. J. Slater et al.   JOURNAL OF ZOOLOGY

Targeted capture and massively parallel sequencing of 12 human exomes

(2009) Sarah B. Ng et al.   NATURE

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Molecular and Evolutionary History of Melanism in North American Gray Wolves

(2009) T. M. Anderson et al.   SCIENCE

Enrichment of sequencing targets from the human genome by solution hybridization

(2009) Ryan Tewhey et al.   GENOME BIOLOGY

Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver

(2008) Catherine I Kolditz et al.   BMC GENOMICS

Better smelling through genetics: mammalian odor perception

(2008) Andreas Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

A novel DNA sequence database for analyzing human demographic history

(2008) J. D. Wall et al.   GENOME RESEARCH

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One