Fungal Community Assembly in the Amazonian Dark Earth

Amazonian Dark Earth and Plant Species from the Amazon Region Contribute to Shape Rhizosphere Bacterial Communities

(2014) Amanda Barbosa Lima et al.   MICROBIAL ECOLOGY

Assessment of Bacterial bph Gene in Amazonian Dark Earth and Their Adjacent Soils

(2014) Maria Julia de Lima Brossi et al.   PLoS One

Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing

(2013) Rodrigo Gouvêa Taketani et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf

(2013) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing

(2013) Eiko E. Kuramae et al.   PLoS One

Changes in Bacterial and Fungal Communities across Compost Recipes, Preparation Methods, and Composting Times

(2013) Deborah A. Neher et al.   PLoS One

Impact of Amazon land use on the community of soil fungi

(2013) Giselle G. M. Fracetto et al.   SCIENTIA AGRICOLA

Entropy and the species accumulation curve: a novel entropy estimator via discovery rates of new species

(2013) Anne Chao et al.   Methods in Ecology and Evolution

Insights into fungal communities in composts revealed by 454-pyrosequencing: implications for human health and safety

(2013) Vidya De Gannes et al.   Frontiers in Microbiology

Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting

(2012) Erik Verbruggen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Indirect biological control of the coffee leaf rust, Hemileia vastatrix, by the entomogenous fungus Lecanicillium lecanii in a complex coffee agroecosystem

(2012) Doug Jackson et al.   BIOLOGICAL CONTROL

State of the scientific knowledge on properties and genesis of Anthropogenic Dark Earths in Central Amazonia (terra preta de Índio)

(2012) Bruno Glaser et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium

(2011) R.C. Summerbell et al.   STUDIES IN MYCOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Influence of Different Land Uses on the Structure of Archaeal Communities in Amazonian Anthrosols Based on 16S rRNA and amoA Genes

(2010) Rodrigo Gouvêa Taketani et al.   MICROBIAL ECOLOGY

Amazonian Anthrosols Support Similar Microbial Communities that Differ Distinctly from Those Extant in Adjacent, Unmodified Soils of the Same Mineralogy

(2010) Julie M. Grossman et al.   MICROBIAL ECOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Bacterial Community Composition in Brazilian Anthrosols and Adjacent Soils Characterized Using Culturing and Molecular Identification

(2009) B. O’Neill et al.   MICROBIAL ECOLOGY

Black carbon affects the cycling of non-black carbon in soil

(2009) Biqing Liang et al.   ORGANIC GEOCHEMISTRY

Isotopic evidence for condensed aromatics from non-pyrogenic sources in soils – implications for current methods for quantifying soil black carbon

(2008) Bruno Glaser et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY