Article
Immunology
Dirk Roggenbuck, Alexander Goihl, Mandy Sowa, Steffi Lopens, Stefan Roediger, Peter Schierack, Karsten Conrad, Ulrich Sommer, Korinna Joehrens, Robert Gruetzmann, Dirk Reinhold, Martin W. Laass
Summary: This study examined the expression of GP2-isoform (GP21-4) in intestinal biopsies of pediatric patients with Crohn's disease (CD), coeliac disease (CeD), ulcerative colitis (UC), and healthy children (HC). The results showed that transcription of GP21-4 was elevated in the proximal small intestine in CeD and CD patients, and CeD patients had higher levels of duodenal GP22/4-mRNA compared to HC/UC patients. Duodenal synthesis of small GP2 isoforms was demonstrated in epithelial cells and Brunner glands, with a more frequent apical location in CD/CeD patients. All four GP2 isoforms interacted with gliadin and phosphopeptidomannan. Gliadin digestion improved binding to GP2 isoforms. The findings suggest an autoimmune link between CeD/CD and GP2.
CLINICAL IMMUNOLOGY
(2023)
Article
Biotechnology & Applied Microbiology
Christin Bartlitz, Rafal Kolenda, Jaroslaw Chilimoniuk, Krzysztof Grzymajlo, Stefan Roediger, Rolf Bauerfeind, Aamir Ali, Veronika Tchesnokova, Dirk Roggenbuck, Peter Schierack
Summary: GP2 plays a role in the defense against E. coli infection and in the corresponding host immune response, and its interactions with FimH variants are not influenced by the host specificity of E. coli.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2022)
Article
Multidisciplinary Sciences
Yosuke Kurashima, Takaaki Kigoshi, Sayuri Murasaki, Fujimi Arai, Kaoru Shimada, Natsumi Seki, Yun-Gi Kim, Koji Hase, Hiroshi Ohno, Kazuya Kawano, Hiroshi Ashida, Toshihiko Suzuki, Masako Morimoto, Yukari Saito, Ai Sasou, Yuki Goda, Yoshikazu Yuki, Yutaka Inagaki, Hideki Iijima, Wataru Suda, Masahira Hattori, Hiroshi Kiyono
Summary: The study demonstrates that pancreatic GP2 can protect the intestinal epithelial barrier from bacterial invasion and is linked to prevention of Crohn's disease. Pancreatic GP2 is the source of intestinal luminal GP2, binding bacteria to prevent their attachment to the epithelium, which also reduces pathology in a DSS colitis mouse model.
NATURE COMMUNICATIONS
(2021)
Article
Gastroenterology & Hepatology
Agnieszka Magdalena Rygiel, Lara Sophie Unger, Franziska Lena Sorgel, Emmanuelle Masson, Ryotaro Matsumoto, Maren Ewers, Jian-Min Chen, Peter Bugert, Louis Buscail, Tomasz Gambin, Grzegorz Oracz, Maria Winiewska-Szajewska, Agnieszka Mianowska, Jaroslaw Poznanski, Joanna Kosinska, Piotr Stawinski, Rafa Ploski, Dorota Koziel, Stanislaw Gluszek, Helmut Laumen, Fredrik Lindgren, J. Matthias Lohr, Anna Orekhova, Vinciane Rebours, Jonas Rosendahl, Andrea Parniczky, Peter Hegyi, Akira Sasaki, Fumiya Kataoka, Yu Tanaka, Shin Hamada, Miklos Sahin-Toth, Eszter Hegyi, Claude Ferec, Atsushi Masamune, Heiko Witt
Summary: CUZD1 may be a novel susceptibility gene for NACP, with predicted deleterious variants accumulating in European patients. No association was found in the Japanese cohort, indicating the need for further investigation on how these variants contribute to pancreatitis.
Article
Immunology
Pavlo Gilchuk, Adrian Guthals, Stefano R. Bonissone, Jared B. Shaw, Philipp A. Ilinykh, Kai Huang, Robin G. Bombardi, Jenny Liang, Ariadna Grinyo, Edgar Davidson, Elaine C. Chen, Bronwyn M. Gunn, Galit Alter, Erica Ollmann Saphire, Benjamin J. Doranz, Alexander Bukreyev, Larry Zeitlin, Natalie Castellana, James E. E. Crowe Jr
Summary: The text discusses clinically relevant ebolaviruses and the development of countermeasures such as vaccines and therapeutics. It also highlights the role of plasma cells in antibody production and the complexity of polyclonal antibody responses.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Multidisciplinary Sciences
Edurne Rujas, Daniel P. Leaman, Sara Insausti, Pablo Carravilla, Miguel Garcia-Porras, Eneko Largo, Izaskun Morillo, Ruben Sanchez-Eugenia, Lei Zhang, Hong Cui, Ibon Iloro, Felix Elortza, Jean-Philippe Julien, Christian Eggeling, Michael B. Zwick, Jose M. M. Caaveiro, Jose L. Nieva
Summary: The study successfully improved the bnAb 4E10 targeting HIV-1 through chemical modification, preserving neutralization potency and breadth while reducing autoreactivity.
Article
Pathology
Ria Uhlig, Karin Guenther, Nina Bro, Natalia Gorbokon, Maximilian Lennartz, Sebastian Dwertmann Rico, Viktor Reiswich, Florian Viehweger, Franziska Buescheck, Martina Kluth, Claudia Hube-Magg, Andrea Hinsch, Christoph Fraune, Christian Bernreuther, Patrick Lebok, Guido Sauter, Jakob R. Izbicki, Stefan Steurer, Eike Burandt, Andreas H. Marx, Till Krech, Ronald Simon, Sarah Minner, Till S. Clauditz, Frank Jacobsen
Summary: GP2 is a glycoprotein abundantly secreted by pancreatic acinar cells, and its expression analysis may have diagnostic value for pancreatic cancer. The study found that GP2 is highly expressed in acinar cell carcinomas and also found in other tumor types.
PATHOLOGY RESEARCH AND PRACTICE
(2022)
Article
Immunology
Junping Hong, Dongmei Wei, Ling Zhong, Qian Wu, Kaiyun Chen, Wanlin Zhang, Yanbo Yang, Junyu Chen, Ningshao Xia, Xiao Zhang, Yixin Chen
Summary: The study isolates two gB-specific NAbs, 8A9 and 8C12, that completely neutralize B-cell infection, demonstrates their recognition of novel epitopes different from AMMO5, and locates their epitopes in gB D-II. This study highlights the importance of gB D-II as a major neutralizing epitope and provides insights for the rational design of therapeutics or vaccines based on gB.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Medical Laboratory Technology
Risa Kaneshige, Yukari Motoki, Mika Yoshida, Kenji Oku, Eriko Morishita, Masahiro Ieko, Kiyoshi Ichihara, Junzo Nojima
Summary: This study evaluated and compared the upper reference limits (URL) and diagnostic accuracy of five commercial assays for diagnosing antiphospholipid syndrome (APS). The results showed that 97.5%URL, which is closer to the cutoff value, is recommended for diagnosing APS.
JOURNAL OF CLINICAL LABORATORY ANALYSIS
(2022)
Article
Biochemistry & Molecular Biology
Hongyu Wang, Xin Li, Lisa A. Lai, Teresa A. Brentnall, David W. Dawson, Kimberly A. Kelly, Ru Chen, Sheng Pan
Summary: Modified DNA X-aptamers targeting THY1 in PDAC were developed and evaluated for high affinity and specificity. These aptamers provide a non-immunogenic affinity ligand for THY1 binding in the context of biomarker development and clinical applications, including potential use in molecular imaging for targeting THY1 in PDAC.
Article
Immunology
Anatoli Slepenkin, Sukumar Pal, Steven Hoang-Phou, Abisola Abisoye-Ogunniyan, Amy Rasley, Patrik D'haeseleer, Matthew A. Coleman, Luis M. de la Maza
Summary: Chlamydia trachomatis is a common sexually transmitted pathogen, and a safer and more effective vaccine is urgently needed. This study found that the antigens PmpG and Pgp3, alone or in combination with MOMP, elicited weaker immune responses, while vaccination with MOMP induced a robust immune response and protected against a respiratory challenge with C. muridarum. Pgp3 antagonized the protection induced by MOMP.
Article
Cell Biology
Jennifer M. Pfaff-Kilgore, Edgar Davidson, Kathryn Kadash-Edmondson, Mayda Hernandez, Erin Rosenberg, Ross Chambers, Matteo Castelli, Nicola Clementi, Nicasio Mancini, Justin R. Bailey, James E. Crowe, Mansun Law, Benjamin J. Doranz
Summary: The E1 and E2 envelope proteins of hepatitis C virus (HCV) form a surprisingly fragile complex where even a single alanine mutation at 92% of positions disrupts its function. The identified amino-acid-level targets are highly conserved and functionally critical, providing potential opportunities for improved therapies and vaccines against hepatitis C.
Article
Medicine, General & Internal
Qi Huang, Shi Sheng Wang, Rong Hua Luo
Summary: This study aims to analyze the correlation between the perfusion CMR results and the S sanguinis count in oral cavity subgingival plaque of PMVA patients, explore the changes in GMP-140, FPA, vWF, and Hcy levels after increased oral cavity anti-infective treatment in PMVA patients, and compare the differences in the S sanguinis count in oral cavity subgingival plaque and oral cavity health status between healthy individuals and PMVA patients.
Review
Biochemistry & Molecular Biology
Ian A. Wilson, Robyn L. Stanfield
Summary: This passage outlines the discovery and role of key structures in the immune system, as well as the structural basis of the immune response to microbial pathogens, with an emphasis on the specificity and affinity of antibodies and antigen receptors.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2021)
Article
Biotechnology & Applied Microbiology
Christoph H. Emmerich, Lorena Martinez Gamboa, Martine C. J. Hofmann, Marc Bonin-Andresen, Olga Arbach, Pascal Schendel, Bjoern Gerlach, Katja Hempel, Anton Bespalov, Ulrich Dirnagl, Michael J. Parnham
Summary: Academic research plays a crucial role in identifying new drug targets, and this Perspective introduces a framework to assist academic scientists and funders in prioritizing target assessment activities to achieve scientific goals and objectives related to licensing, industry collaboration, and clinical trials.
NATURE REVIEWS DRUG DISCOVERY
(2021)
Article
Multidisciplinary Sciences
Ivana Kern, Olaf Schoffer, Wieland Kiess, Jobst Henker, Martin W. Laass, Ulf Winkler, Juergen Quietzsch, Olaf Wenzel, Marlen Zurek, Katrin Buettner, Peter Fischer, Jan de Laffolie, Ulf Manuwald, Thoralf Stange, Ronny Zenker, Jens Weidner, Klaus-Peter Zimmer, Hildebrand Kunath, Joachim Kugler, Thomas Richter, Ulrike Rothe
Summary: The incidence of inflammatory bowel disease (IBD) in children and adolescents in Saxony, Germany, was slightly higher than the average of other countries during the same time period and showed a trend towards a general increase. The age at diagnosis exhibited a very unfavorable downward trend.
Article
Biology
Natascha Ingrid Drude, Lorena Martinez Gamboa, Meggie Danziger, Ulrich Dirnagl, Ulf Toelch
Summary: The purpose of preclinical research is to guide the development of novel diagnostics or therapeutics, with results from animal models informing decisions on human studies. Despite apparent efficacy demonstrated in preclinical studies, a significant number of clinical trials still fail. Large-scale replication studies are currently investigating factors influencing the robustness of preclinical research.
Article
Genetics & Heredity
Andreas R. Janecke, Xiaoqin Liu, Ruediger Adam, Sumanth Punuru, Arne Viestenz, Valeria Strauss, Martin Laass, Elizabeth Sanchez, Roberto Adachi, Martha P. Schatz, Ujwala S. Saboo, Naveen Mittal, Klaus Rohrschneider, Johanna Escher, Anuradha Ganesh, Sana Al Zuhaibi, Fathiya Al Murshedi, Badr AlSaleem, Majid Alfadhel, Siham Al Sinani, Fowzan S. Alkuraya, Lukas A. Huber, Thomas Mueller, Ruth Heidelberger, Roger Janz
Summary: New STX3 variants have been found to be associated with a syndrome including congenital enteropathy and retinal dystrophy. These variants affect STX3 transcripts, leading to reduced numbers of photoreceptors and thinning of cell layers.
Article
Medicine, General & Internal
Annika Reddig, Linda Voss, Karina Guttek, Dirk Roggenbuck, Eugen Feist, Dirk Reinhold
Summary: JAKis present a new strategy in rheumatoid arthritis therapy, with similar inhibitory effects on lymphocyte proliferation but potential detrimental effects on cell viability and DNA damage repair at high doses. The study provides insights into the immunomodulatory effects of different JAKis and their impact on PBMCs.
JOURNAL OF CLINICAL MEDICINE
(2021)
Article
Genetics & Heredity
S. Kocher, J. Volquardsen, A. Perugachi Heinsohn, C. Petersen, D. Roggenbuck, K. Rothkamm, W. Y. Mansour
Summary: The article discusses an automated method for quantifying DNA damage-induced foci in adherent tumor cells, ensuring fast and reliable automated nuclei detection through critical steps. The system was validated for IR dose-dependent increase and ATM and PARP inhibitor-induced radiosensitization, providing a cost-effective, high throughput analysis of DNA damage induced foci.
Article
Biochemistry & Molecular Biology
Victoria Liedtke, Christian Schroder, Dirk Roggenbuck, Romano Weiss, Ralf Stohwasser, Peter Schierack, Stefan Rodiger, Lysann Schenk
Summary: LEDGF/p75, an important factor in cancer, affects the DNA-damage repair signaling pathway. Depletion of LEDGF leads to reduced cell proliferation and migration, increased sensitivity to chemotherapeutic drugs, and alterations in DDR signaling pathways. Unexpectedly, untreated LEDGF KO cells exhibit increased DNA fragmentation and formation of specific proteins, highlighting the significant role of LEDGF/p75 in homology-directed DNA repair.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Geriatrics & Gerontology
Jonas Schmidt, Sandro Berghaus, Frithjof Blessing, Folker Wenzel, Holger Herbeck, Josef Blessing, Peter Schierack, Stefan Roediger, Dirk Roggenbuck
Summary: This study explored host-virus interactions following SARS-CoV-2 infection, revealing that antibody generation was mainly influenced by age and overweight. Genetic SARS-CoV-2 variants, antibody levels, blood type, and comorbidities were associated with COVID-19 traits. Anti-S/N IgM was the only antibody related to the need for hospitalization.
Article
Multidisciplinary Sciences
Jonas Schmidt, Sandro Berghaus, Frithjof Blessing, Holger Herbeck, Josef Blessing, Peter Schierack, Stefan Rodiger, Dirk Roggenbuck, Folker Wenzel
Summary: Nanopore sequencing has great potential for clinical diagnostics, but further validation and certification are required.
Review
Biochemistry & Molecular Biology
Romano Weiss, Sanaz Karimijafarbigloo, Dirk Roggenbuck, Stefan Roediger
Summary: Neural networks, also known as artificial neural networks, are crucial tools in deep-learning applications, and their popularity has soared since the early 2000s. This review focuses on the use of deep learning in biomedical data analysis, particularly in the analysis of biomarkers in bioimage data. The article also provides quantitative insights into the usage of network types in different scientific fields based on a data analysis of neural network publications.
Editorial Material
Biology
Natascha Drude, Lorena Martinez-Gamboa, Tamarinde Haven, Constance Holman, Martin Holst, Silke Kniffert, Sarah McCann, Torsten Rackoll, Robert Schulz, Sarah Weschke
Summary: Improving the reproducibility and trustworthiness of biomedical research requires engaging stakeholders at all levels. The QUEST Center for Responsible Research aims to develop and implement new approaches to improve research culture and practice, tailored to stakeholder needs. By sharing lessons from working groups, the authors highlight common themes that have influenced the success of many projects.
BMC RESEARCH NOTES
(2022)
Article
Immunology
Dirk Roggenbuck, Alexander Goihl, Mandy Sowa, Steffi Lopens, Stefan Roediger, Peter Schierack, Karsten Conrad, Ulrich Sommer, Korinna Joehrens, Robert Gruetzmann, Dirk Reinhold, Martin W. Laass
Summary: This study examined the expression of GP2-isoform (GP21-4) in intestinal biopsies of pediatric patients with Crohn's disease (CD), coeliac disease (CeD), ulcerative colitis (UC), and healthy children (HC). The results showed that transcription of GP21-4 was elevated in the proximal small intestine in CeD and CD patients, and CeD patients had higher levels of duodenal GP22/4-mRNA compared to HC/UC patients. Duodenal synthesis of small GP2 isoforms was demonstrated in epithelial cells and Brunner glands, with a more frequent apical location in CD/CeD patients. All four GP2 isoforms interacted with gliadin and phosphopeptidomannan. Gliadin digestion improved binding to GP2 isoforms. The findings suggest an autoimmune link between CeD/CD and GP2.
CLINICAL IMMUNOLOGY
(2023)
Article
Medicine, General & Internal
Steffi Lopens, Ewa Wunsch, Malgorzata Milkiewicz, Nadja Roeber, Grit Zarske, Abdullah Nasser, Karsten Conrad, Martin Laass, Stefan Roediger, Marcin Krawczyk, Dirk Roggenbuck, Piotr Milkiewicz
Summary: In this study, a new third-generation ELISA for the detection of PR3-ANCA was evaluated and found to be a diagnostic and prognostic marker for PSC.
Article
Multidisciplinary Sciences
Fan Dong, Ivana Kern, Jens Weidner, Kathleen Kuegler, Ulrike Rothe, Makan Amin, Martin W. Laass, Gunter Flemming, Ulf Winkler, Thomas Richter, Joachim Kugler, Ulf Manuwald
Summary: In Saxony, the incidence of Crohn's disease (CD) in children and adolescents has significantly increased from 2000 to 2014. This study aims to describe the initial characteristics and clinical course of CD in this population and identify drug treatment options associated with better outcomes.